View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18973_low_1 (Length: 1267)
Name: NF18973_low_1
Description: NF18973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18973_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 1093; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1093; E-Value: 0
Query Start/End: Original strand, 19 - 1258
Target Start/End: Complemental strand, 39396760 - 39395523
Alignment:
| Q |
19 |
atgacaaggtctctatcaatcacaataactttagaaattagtctctctgaggtgaactatctaacattttggaatgcccaaataaaattatcttgttgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396760 |
atgacaaggtctctatcaatcacaataactttagaaattagtctctctgaggtgaactatctaacattttggaatgcccaaataaaattatcttgttgtt |
39396661 |
T |
|
| Q |
119 |
catgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39396660 |
catgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggttgtttgtacctatttgttttgtgtca |
39396561 |
T |
|
| Q |
219 |
aggatcaatatcaaatgaaacatgttcaataactttactgaatcaagatttgtccaaaatacggcactcgcagcatccaagtcctccctctttcttgtca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
39396560 |
aggatcaatatcaaatgaaacatgttcaataacttcactgaatcaagatgtgtccaaaatacggcacttgcaacatccaagtcctccctctttcttgtca |
39396461 |
T |
|
| Q |
319 |
aatacatatactttgcacattctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataagtactccatgcccttatatt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
39396460 |
aatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgtaagaaactctcaaagaagattgataagtactccatg-ccttatatt |
39396362 |
T |
|
| Q |
419 |
tgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaatctcattgttgtgtggtactttttcgtatcataatctatttttcc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
39396361 |
tgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaatctcattgtcatgtggtactttttcgtatcataatctatttttcc |
39396262 |
T |
|
| Q |
519 |
tcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgtcttaggtggtctaaatgattgttttagtttgatttgggggaaatt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39396261 |
tcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgtcttaggtggtctaaatgattgttttagtttgatttgggggaaatt |
39396162 |
T |
|
| Q |
619 |
atacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacagacacgaaatagggtctcaaaataggtgtacgtataatctgtgaaac |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39396161 |
atacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacagacacgaaatagggtctcaaaataggtgtacgtataatctgtgaaat |
39396062 |
T |
|
| Q |
719 |
tatgtacacannnnnnnnnaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacaatattacagtctaattgtatttagtca |
818 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
39396061 |
tatgtacaca-ttttttttaaacaaaaattatgtacacattaaacaaatgcacaaagtaaaacaatatgaacagtattacagtctaattgtatttagtca |
39395963 |
T |
|
| Q |
819 |
ctgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggtattattatnnnnnnnnnnnnnnnnnctttttctccttataagat |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
39395962 |
ctgtgtaatttgcattacgtttgtagatgttcttcattgggaagttcttttcgggtattattattagtagcagtagtagtactttttctccttataagat |
39395863 |
T |
|
| Q |
919 |
caccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaatcatcaaaatgtgattcatctaaatgatcaaagtcatcatgaat |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
39395862 |
caccaaatcttctcagcaatgctttactttttctgttgtttctatcagcctcagaatcatcaaaatgtgattcatctaaatgatcaaaatcttcatgaat |
39395763 |
T |
|
| Q |
1019 |
tcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaatattgaaccctttagtgtatcatcttctacaataatttctttatta |
1118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39395762 |
tcccatttcaacatgtgtttctgaatcaggtgaatcgtcctccacttcatcaaatattgaaccctttagtgtatcatcttctacaataatttctttatta |
39395663 |
T |
|
| Q |
1119 |
acaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgtcttttatattaagactaaaagttttgcttaaactttttgattctt |
1218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39395662 |
acaacctcttcattattcccccctttgtgttgctgcttatgtggtgttatcatgtcttttatattaagactaaaagttttgcttaaactttttgattctt |
39395563 |
T |
|
| Q |
1219 |
taggctccttatgatgttgttctcctgagtgatgatgatg |
1258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39395562 |
taggctccttatgatgttgttctcctgagtgatgatgatg |
39395523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 43598202 - 43598128
Alignment:
| Q |
118 |
tcatgttccaaataagcaaaagctgccgaaaaagataactttgtagatgttacatcaacaattttaagcaatggt |
192 |
Q |
| |
|
|||||||||||||||||||||||| || |||| | |||||| |||||||||| |||||||| |||||||||| |
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|
| T |
43598202 |
tcatgttccaaataagcaaaagctaccaaaaacgttaacttcatagatgttacgctaacaatttaaagcaatggt |
43598128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
339 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
398 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
384 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
458 |
Q |
| |
|
||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
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|
| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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