View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18973_low_3 (Length: 329)
Name: NF18973_low_3
Description: NF18973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18973_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 38257164 - 38256854
Alignment:
| Q |
1 |
tacaactcattcaaaaatgagatagagcaagattttcttgcaatcagagacaaaaaataaatcctcgaagaccaaagtagagagccaaatgagatacagt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38257164 |
tacaactcattaaaaaatgagatagagcaagattttcttgcaatcagagacaaaaa-taaatcctcgaagaccaaagtagagagccaaatgagatacagt |
38257066 |
T |
|
| Q |
101 |
cattataaaataaggttgagtggaaactgcataacggaaaacggtgaccaacccatattttaatcttgatnnnnnnngacaaagaagtttcctagaaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38257065 |
cattataaaataaggttgagtggaaactgcataacggaaaacggtgaccaacccatattttaatcttgataaaaaaagacaaagaagtttcctagaaaca |
38256966 |
T |
|
| Q |
201 |
gcgaataaatgcaatgctaataggcgttaatgtgaaattcgagagttatagcaatgctctttaaaatttgactgttttggtccctcatttaaatatttga |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38256965 |
gcgaataaatgcaatgctaataggcgttcatgtgaaattcgagagttatagcaatgctctttaaaatttg--tgttttggtccctcatttaaatatttga |
38256868 |
T |
|
| Q |
301 |
tctaaaatatggtg |
314 |
Q |
| |
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|||||||||||||| |
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| T |
38256867 |
tctaaaatatggtg |
38256854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 1602695 - 1602749
Alignment:
| Q |
260 |
tttaaaatttgactgttttggtccctcatttaaatatttgatctaaaatatggtg |
314 |
Q |
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||||||||||||| ||||||||||||| | ||||||||| |||||||||||||| |
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| T |
1602695 |
tttaaaatttgacagttttggtccctccatcaaatatttggtctaaaatatggtg |
1602749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 24263967 - 24264021
Alignment:
| Q |
260 |
tttaaaatttgactgttttggtccctcatttaaatatttgatctaaaatatggtg |
314 |
Q |
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||||||||||||| ||||||||| || ||||||| |||||||||||||||||| |
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| T |
24263967 |
tttaaaatttgacagttttggtcggtccattaaatacttgatctaaaatatggtg |
24264021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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