View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_10 (Length: 596)
Name: NF18974_high_10
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 38 - 579
Target Start/End: Original strand, 2151359 - 2151906
Alignment:
| Q |
38 |
attaccattggttcaccagaattatttttgactggaaccttagcaaacccaattttactacatgatgaattccacaaattagtaagaggtgattctatgg |
137 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2151359 |
attaccattggttcaccagaattatttgtgactggaaccttagcaaacccaattttactacacgatgaattccacaaattagtaagaggtgattctatgg |
2151458 |
T |
|
| Q |
138 |
tatacacaatcgtataactgccactgcttagacaaggtatattaggaagatcatcaaatggttccttttcaacattgttggtacaattgagaaatattac |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151459 |
tatacacaatcgtataactgccactgcttagacaaggtatattaggaagatcatcaaatggttccttttcaacattgttggtacaattgagaaatattac |
2151558 |
T |
|
| Q |
238 |
gttttcataatgatcattttcataagacttgtccaattggaaaggtgaatcatcgtcg------atgtctatgttttgaatgaacattcttggtggacaa |
331 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
2151559 |
gttttcataatggtcattttcataagacttgtccaattggaaaggtgaatcatcgtcgatgtctatgtctatgttttgaatgaaccttcttggtggacaa |
2151658 |
T |
|
| Q |
332 |
tcattgagatccttgaccaaaattctttgtctctcatgataaatatgtttgacagcaaattctcttccatttgagagtgtaatcaaaggttggttattct |
431 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2151659 |
tcattgagatccttgaccaaaattctttgtctctcacggtaaatatgtttgacaacaaattctcttccatttgagagtgtaatcaaaggttgcttattct |
2151758 |
T |
|
| Q |
432 |
tgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaactcnnnnnnnngttc |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | || |
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| T |
2151759 |
tgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttttcttaattggaatgggaactcaaaaaaaagatc |
2151858 |
T |
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| Q |
532 |
cgacgagtttccacaatgtctcttgtcacaaattggagctgtgctttt |
579 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2151859 |
cgacgagtttccacaatgtctcttgtcacacattggagctgtgctttt |
2151906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 36 - 516
Target Start/End: Original strand, 2145950 - 2146433
Alignment:
| Q |
36 |
tgattaccattggttcaccagaattatttttgactggaaccttagcaaacccaattttactacatgatgaattccacaaattagtaagaggtgattctat |
135 |
Q |
| |
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|||| |||||||||| ||| || |||| ||| ||||||||||||||| | ||||| | | ||| |||| | ||||||||||| |||| |||||| || |
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| T |
2145950 |
tgataaccattggttgaccggatttatctttaactggaaccttagcagatccaatctcatgacacgatggactccacaaattaccaagaagtgattgtaa |
2146049 |
T |
|
| Q |
136 |
ggtatacacaatcgtataactgccactgcttagacaaggtatatta---ggaagatcatcaaa---tggttccttttcaacattgttggtacaattgaga |
229 |
Q |
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| T |
2146050 |
cgcatacatgatcaaatagttgtcattgcttagacaaggtatattattaggaagatgatcaaacattggttcctttgca---tttttagtacaattgaga |
2146146 |
T |
|
| Q |
230 |
aatattacgttttcataatgatcattttcataagacttgtccaattggaaaggtgaatcatcgtcgatgtctatgttttgaatgaacattcttggtggac |
329 |
Q |
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||| ||||||||||||||||| | | | |||| ||||| ||||||| |||||||||||| || |||||||||||||| |||| |||||||||||| |
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| T |
2146147 |
aatgttacgttttcataatgagtactatgataaagtctgtcccgttggaaaagtgaatcatcgttgaggtctatgttttgaaggaaccttcttggtggac |
2146246 |
T |
|
| Q |
330 |
aatcattgagatccttgaccaaaattctttgtctctcatgataaatatgtttgacagcaaattctcttccatttgagagtgtaatcaaaggttggttatt |
429 |
Q |
| |
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|||||||| |||| | | | | |||||||| ||||||| | |||| ||||| | || ||||| |||||||||||||||||||||||||||| ||||| |
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| T |
2146247 |
aatcattgggatcatccatccatattctttggctctcataggatatatttttgataacatattcttttccatttgagagtgtaatcaaaggttgcttatt |
2146346 |
T |
|
| Q |
430 |
cttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaa |
516 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
2146347 |
tttgcaaacaacttcaaagcctgggtacacacatcgatcactttgattattgctaatttgattttcttctcttaattggaaagggaa |
2146433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 11 - 475
Target Start/End: Original strand, 2141796 - 2142267
Alignment:
| Q |
11 |
aatatatcagagtttagtccatcattgattaccattggttcaccagaattatttttgactggaaccttagcaaacccaattttactacatgatgaattcc |
110 |
Q |
| |
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||||||||||||| ||||||||| | ||||||| ||||| ||| || |||||| |||| ||||||||||| | | ||| | | ||| |||| | ||| |
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| T |
2141796 |
aatatatcagagtatagtccatcgtggattaccgttggtagaccggatttatttatgaccggaaccttagctgatcgaatctcatgacacgatggactcc |
2141895 |
T |
|
| Q |
111 |
acaaattagtaagaggtgattctatggtatacacaatcgtataactgccactgcttagacaaggtatattaggaagatcatcaaa---tggttccttttc |
207 |
Q |
| |
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|||||||| |||||||||||| || ||||||| |||| ||| || || |||||||||||||||||||||||||||||||||| |||| | ||| | |
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| T |
2141896 |
acaaattactaagaggtgattgtaacgtatacatgatcgaatacttgtcattgcttagacaaggtatattaggaagatcatcaaacattggtccgtttgc |
2141995 |
T |
|
| Q |
208 |
aacattgttggtacaattgagaaatattacgttttcataatgatcattt---tcataagacttgtccaattggaaaggtgaatcatcgtcgatgtctatg |
304 |
Q |
| |
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|| |||| | ||||| ||||||||| ||||||||||||||| || | | | || | | ||||| |||||||||||||||||| || || ||||||| |
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| T |
2141996 |
aaaattggtagtacagttgagaaatgttacgttttcataataatgagtactatgatcaaatctgtcccattggaaaggtgaatcattgttgaggtctatg |
2142095 |
T |
|
| Q |
305 |
ttttgaatgaacattcttggtggacaatcattgagatccttgaccaaaattctttgtctctcatgataaatatgtttgacagcaaattctcttccatttg |
404 |
Q |
| |
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|| || |||| |||||||| |||| |||| |||| | | | |||||||||| || |||| ||| | ||||||| ||||||||||||||||| |
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| T |
2142096 |
ttc--aaggaaccgtcttggtgaacaaccattaggatcatccaaccaaattctttgacttgcatgggaaaattttttgacaataaattctcttccatttg |
2142193 |
T |
|
| Q |
405 |
agagtgtaatcaaaggttggt---tattcttgcaaacaacttcaaatcctgggtacacacatcgatcactttga |
475 |
Q |
| |
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||||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
2142194 |
agagtgtaatcaaaggttggttcatattgttgcaataaacttcaaatcctgggtacccacatcgatcactttga |
2142267 |
T |
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