View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_111 (Length: 237)
Name: NF18974_high_111
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_111 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 57 - 221
Target Start/End: Complemental strand, 42881170 - 42880986
Alignment:
| Q |
57 |
tcccatcgatcacatttcttgattctgaaaaccagacatgaaatttccttgcatttgcctaagttgtccatggatagaagaaaagttccaataccaa--- |
153 |
Q |
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| T |
42881170 |
tcccatcgatcacatttcttgattctgaaaaccagacatgaaatttccttgcatttgcctaagttgtccatggatagaagaaaagttccaataccaaaag |
42881071 |
T |
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| Q |
154 |
-----------------tagccatgcttttgcataatacaacactatcttgtttgtgcatcatagactaataaacgccttggttt |
221 |
Q |
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| T |
42881070 |
atctacattaacaaatgtagccatgcttttgcataatacaacactatcttgtttgtgcatcatagactgataaacgccttggttt |
42880986 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 42880815 - 42880743
Alignment:
| Q |
80 |
tctgaaaaccagacatgaaatttccttgcatttgcctaagttgtccatggatagaagaaaagttccaataccaa |
153 |
Q |
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| T |
42880815 |
tctgaaaactaggcatgaaacttccttgcctttgcctccgttgtccatggatagaa-aaaaattccaataccaa |
42880743 |
T |
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