View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_high_112 (Length: 235)
Name: NF18974_high_112
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_112 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 4485135 - 4484915
Alignment:
| Q |
15 |
gtttacaccagatcaaattggattcaagtccatgcttcttcatcattgaattagtcctacgaaaatctatagtaacgaaactggcatatttgatgagaca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4485135 |
gtttacaccagatcaaattggattcaagtccatgcttcttcatcattgaattagtcctacgaaaatctatagtaacgaaactggcatatttgatgagaca |
4485036 |
T |
|
| Q |
115 |
aattaagttaaagattttgagtgtgaattagagcgatacagaccggataaacataaactgnnnnnnnnnnnnnnnnnngttcttcagaaagtttttatat |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4485035 |
aattaagttaaagattttgagtgtggattagagcgatacagaccggataaacataaactgaaaaaattaaataaaaaagttcttcagaaagtttttatat |
4484936 |
T |
|
| Q |
215 |
tcagacgaagaatcaaaattc |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4484935 |
tcagacgaagaatcaaaattc |
4484915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University