View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_117 (Length: 226)
Name: NF18974_high_117
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_117 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 46303158 - 46303366
Alignment:
| Q |
1 |
aagtacagttttatacaggaaggagcattctctggccaacaacataagtcaggaataacataaacccactaacacacatgattccaacctataaatgaaa |
100 |
Q |
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| T |
46303158 |
aagtacagttttatacaggaaggagcattctctggccaacaacataagtcaggaataacataa-cccactaacacacatgattccaacctataaatgaaa |
46303256 |
T |
|
| Q |
101 |
gtactcaattaactgctgctatattaataactactcttattgatattctttctcttcttctcagccatcccaatcttcttctcacttatttcatcagctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46303257 |
gtactcaattaactgctgctatattaataactactcttattgatattctttctcttcttctcagccatcccaatcttcttctcacttatttcatcagctc |
46303356 |
T |
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| Q |
201 |
atcggttcat |
210 |
Q |
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|||||||||| |
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| T |
46303357 |
atcggttcat |
46303366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 46260219 - 46260326
Alignment:
| Q |
92 |
taaatgaaagtactcaattaactgctgctatattaataactactcttattgatattctttctcttct-tctcagccatcccaatcttcttctcacttatt |
190 |
Q |
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||||||| ||| ||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| || ||||||||| |||| ||| |||||||| |
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| T |
46260219 |
taaatgagagtcctcgattaactgctgctatattaataactactcttattgctcttctttctcttctacctaggccatcccattcttgttcccacttatt |
46260318 |
T |
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| Q |
191 |
tcatcagc |
198 |
Q |
| |
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|||||||| |
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| T |
46260319 |
tcatcagc |
46260326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 46302825 - 46302930
Alignment:
| Q |
30 |
ctctggccaacaacataagtcaggaataacataaacccactaacacacatgattccaacctataaatgaaa-gtactcaattaactgctgctatattaat |
128 |
Q |
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| T |
46302825 |
ctctagccaacaacataaattacgcataacataa-cccactaacacacatgattccaacttataatttaaaggtactcaagtaattgctgccttattaaa |
46302923 |
T |
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| Q |
129 |
aactact |
135 |
Q |
| |
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||||||| |
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|
| T |
46302924 |
aactact |
46302930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 46306664 - 46306702
Alignment:
| Q |
63 |
aacccactaacacacatgattccaacctataaatgaaag |
101 |
Q |
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| T |
46306664 |
aacccactaacacacatgattccaacctataaatgaaag |
46306702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 4524663 - 4524720
Alignment:
| Q |
67 |
cactaacacacatgattccaacctataaatgaaagtactcaattaactgctgctatat |
124 |
Q |
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| T |
4524663 |
cactaacacacatgattccaacctataattgaaagtacttcagtaactgctcctatat |
4524720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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