View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_13 (Length: 569)
Name: NF18974_high_13
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 11 - 513
Target Start/End: Original strand, 195194 - 195697
Alignment:
| Q |
11 |
cagagatgaggtcaacaagtgtttgttggaggcaactgttggaaccaaggcaaaggagataaagcaaaatgtgctcagcttgaaggcggcagcggaagct |
110 |
Q |
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| T |
195194 |
cagagatgaggttaacaagtgtttgttggaggcaactgttggaaccaaggcaaaggagataaagcaaaatgtgctcagcttgaaggcggcagcggaagct |
195293 |
T |
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| Q |
111 |
gctattagagatggtggttcttcacaccgcaatattgaatcatttgtcgatgaaataaggaagagaagcatcgaaatgaggagcaaaagcatgcgattga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
195294 |
gctattagagatggtggttcttcacaccgcaatattgaatcatttgtcgatgaaataaggaagagaagcatcgaaatgaggagcaaaagcatgcgattga |
195393 |
T |
|
| Q |
211 |
cttcgatcaaactagttaacggctgattttgctagggacgttcaagttatgaccaaagctttcttgacagcttgtattgtattgagc-ttgctatatttt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
195394 |
cttcgatcaaactagttaacggctgattttgctagggacgttcaagttatgaccaaagctttcttgacaacttgtattgtattgagctttgctatatttt |
195493 |
T |
|
| Q |
310 |
acatgtacttgtgtgtctagaaataaagaataagaatgaccaacaaaaatataacaaaatattttgtttaggctggtccgcaaattaagaatcacattca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
195494 |
acatgtacttgtgtgtctagaaataaagaataagaatgaccaacaaaaatataacaaaatattttgtttaggctggtccgcaaattaagaatcacattca |
195593 |
T |
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| Q |
410 |
cacctggttatgtatctgatgtaaataaggttcttccattttacaaagcaagtatatttttaagaaactaagcacgttttggtaaagatgctacataatc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
195594 |
cacctggttatgtatctgatgtaaataaggttcttccattttacaaagcaagtatatttttaagaaactaagcacgttttggtaaagatgctacataatc |
195693 |
T |
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| Q |
510 |
aata |
513 |
Q |
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|||| |
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| T |
195694 |
aata |
195697 |
T |
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