View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_17 (Length: 535)
Name: NF18974_high_17
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 3e-68; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 384 - 527
Target Start/End: Complemental strand, 37162687 - 37162544
Alignment:
| Q |
384 |
ctcgcgatgtaaagcaatgctgtatttttatatggcattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattg |
483 |
Q |
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| T |
37162687 |
ctcgcgatgtatagcaatgctgtatttttatatggcattattaacttctgactgcccatacaagagtggagtaatgttgcaaaatagtggattttgattg |
37162588 |
T |
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| Q |
484 |
gatattagtgtaaaactgttttcttctgacggtgtatattcttc |
527 |
Q |
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| T |
37162587 |
gatattagtgtaaaactgttttcttctgacggtgtatattcttc |
37162544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 37164614 - 37164527
Alignment:
| Q |
18 |
atctctaattgacttctgaatacatatcatctttaattgttttacatgttttttaaatttactgggcttcgaacccttatatgtagct |
105 |
Q |
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| T |
37164614 |
atctctaattgacttctgaatacatatcatctttagttgttttacatgttttttaaatttactgggcttcgaacccttatatgtagct |
37164527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 390
Target Start/End: Complemental strand, 37162730 - 37162695
Alignment:
| Q |
355 |
atcaaaggctttttgctgtcgggataacactcgcga |
390 |
Q |
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| T |
37162730 |
atcaaaggctttttgctgtcgggataacactcgcga |
37162695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 37162793 - 37162748
Alignment:
| Q |
275 |
accagtgctgtattgtgtggtaaaccgcctgaaagctatgtggggcctt |
323 |
Q |
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| T |
37162793 |
accagtgctgtattgtg--gtaa-ccgcctgaaagctatgtggggcctt |
37162748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 526
Target Start/End: Complemental strand, 596529 - 596422
Alignment:
| Q |
419 |
cattattaacttctgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaactgttttcttctgacggtgt |
518 |
Q |
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| T |
596529 |
cattattaacttgtaactacccatacaagagtggggttatgtggcaaaatagttgattttgattgaatgttagtgtaaaactggttttaattgacggtgg |
596430 |
T |
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| Q |
519 |
atattctt |
526 |
Q |
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| T |
596429 |
atattctt |
596422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 499
Target Start/End: Original strand, 49250276 - 49250327
Alignment:
| Q |
448 |
agtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaac |
499 |
Q |
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| T |
49250276 |
agtggggtgatgttgcaaaatagtggattttcattggatgttaatgtaaaac |
49250327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 506
Target Start/End: Complemental strand, 17511398 - 17511349
Alignment:
| Q |
457 |
atgttgcaaaatagtggattttgattggatattagtgtaaaactgttttc |
506 |
Q |
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| T |
17511398 |
atgtggcaaagtagtggattttcattggatgtcagtgtaaaactgttttc |
17511349 |
T |
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