View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_high_21 (Length: 509)

Name: NF18974_high_21
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_high_21
NF18974_high_21
[»] chr2 (29 HSPs)
chr2 (1-490)||(42408887-42409376)
chr2 (11-54)||(24097815-24097858)
chr2 (4-54)||(9395130-9395180)
chr2 (4-54)||(42621395-42621445)
chr2 (11-54)||(40158725-40158768)
chr2 (1-49)||(36863650-36863698)
chr2 (3-54)||(4026816-4026867)
chr2 (3-54)||(10567056-10567107)
chr2 (1-48)||(15377762-15377809)
chr2 (11-54)||(15977992-15978035)
chr2 (11-54)||(35379036-35379079)
chr2 (8-54)||(1939352-1939398)
chr2 (4-54)||(5759595-5759645)
chr2 (4-54)||(9556239-9556289)
chr2 (4-54)||(33319832-33319882)
chr2 (4-54)||(36852472-36852522)
chr2 (5-51)||(42817399-42817445)
chr2 (1-54)||(9477949-9478002)
chr2 (1-54)||(10563578-10563631)
chr2 (4-49)||(10884546-10884591)
chr2 (13-54)||(16398123-16398164)
chr2 (6-54)||(3227703-3227751)
chr2 (11-51)||(6993747-6993787)
chr2 (4-48)||(13736319-13736363)
chr2 (4-48)||(13869121-13869165)
chr2 (2-54)||(33391027-33391079)
chr2 (18-54)||(36395307-36395343)
chr2 (4-40)||(40435015-40435051)
chr2 (7-51)||(43600708-43600752)
[»] chr4 (17 HSPs)
chr4 (273-398)||(25414649-25414774)
chr4 (1-54)||(18628563-18628616)
chr4 (11-54)||(8468955-8468998)
chr4 (7-53)||(4191721-4191767)
chr4 (4-54)||(7694030-7694080)
chr4 (4-54)||(27721717-27721767)
chr4 (4-54)||(53673678-53673728)
chr4 (11-54)||(11802541-11802584)
chr4 (12-54)||(825510-825552)
chr4 (14-52)||(10194716-10194754)
chr4 (1-51)||(36722692-36722742)
chr4 (4-54)||(43932435-43932485)
chr4 (4-54)||(47800623-47800673)
chr4 (4-54)||(55414440-55414490)
chr4 (1-54)||(43824280-43824333)
chr4 (6-54)||(4500848-4500896)
chr4 (10-54)||(50004164-50004208)
[»] chr1 (20 HSPs)
chr1 (1-54)||(35179136-35179189)
chr1 (4-51)||(11639439-11639486)
chr1 (13-53)||(27807105-27807145)
chr1 (4-54)||(4700086-4700136)
chr1 (4-54)||(32113658-32113708)
chr1 (2-50)||(51929799-51929847)
chr1 (11-54)||(25479588-25479631)
chr1 (4-54)||(7137018-7137068)
chr1 (4-54)||(7472311-7472361)
chr1 (18-52)||(26916215-26916249)
chr1 (1-39)||(51957418-51957456)
chr1 (9-54)||(1565152-1565197)
chr1 (13-54)||(10199428-10199469)
chr1 (11-52)||(37241844-37241885)
chr1 (6-51)||(38867854-38867899)
chr1 (1-54)||(41853794-41853847)
chr1 (14-54)||(37593704-37593744)
chr1 (11-51)||(38651454-38651494)
chr1 (4-52)||(44422699-44422747)
chr1 (1-45)||(48282131-48282175)
[»] chr5 (21 HSPs)
chr5 (11-54)||(37588380-37588423)
chr5 (11-54)||(27565370-27565413)
chr5 (11-54)||(37526219-37526262)
chr5 (3-53)||(7319029-7319079)
chr5 (4-54)||(35553208-35553258)
chr5 (14-54)||(3970700-3970740)
chr5 (10-54)||(36638753-36638797)
chr5 (11-54)||(15074769-15074812)
chr5 (7-54)||(36774727-36774774)
chr5 (4-54)||(1550897-1550947)
chr5 (20-54)||(3504760-3504794)
chr5 (5-55)||(3977309-3977359)
chr5 (4-54)||(8651373-8651422)
chr5 (5-54)||(4014444-4014493)
chr5 (1-42)||(6582864-6582905)
chr5 (13-54)||(10125738-10125779)
chr5 (5-54)||(17258903-17258952)
chr5 (1-54)||(41957471-41957524)
chr5 (10-54)||(13604869-13604913)
chr5 (1-49)||(36639519-36639567)
chr5 (11-54)||(37690656-37690700)
[»] chr3 (15 HSPs)
chr3 (11-54)||(14548741-14548784)
chr3 (4-54)||(34254828-34254878)
chr3 (4-53)||(2719468-2719517)
chr3 (1-54)||(40665426-40665479)
chr3 (5-54)||(41633361-41633410)
chr3 (10-54)||(3845582-3845626)
chr3 (11-51)||(8933794-8933834)
chr3 (1-53)||(48286831-48286883)
chr3 (11-54)||(1816590-1816633)
chr3 (7-54)||(44284100-44284147)
chr3 (4-54)||(20502088-20502138)
chr3 (5-49)||(24158528-24158572)
chr3 (10-54)||(24887303-24887347)
chr3 (10-54)||(48528562-48528606)
chr3 (11-51)||(51510216-51510256)
[»] chr8 (19 HSPs)
chr8 (6-51)||(35220746-35220791)
chr8 (7-54)||(20672753-20672800)
chr8 (11-54)||(31862500-31862543)
chr8 (4-54)||(27028831-27028881)
chr8 (12-54)||(27754412-27754454)
chr8 (1-54)||(11795089-11795142)
chr8 (1-50)||(34551117-34551166)
chr8 (10-54)||(44236843-44236887)
chr8 (3-54)||(9700000-9700051)
chr8 (12-54)||(1433556-1433598)
chr8 (1-51)||(10075574-10075624)
chr8 (11-49)||(10923603-10923641)
chr8 (4-54)||(11494146-11494196)
chr8 (4-54)||(12361192-12361242)
chr8 (4-54)||(28769359-28769409)
chr8 (11-83)||(40157519-40157585)
chr8 (1-49)||(13652212-13652260)
chr8 (1-49)||(13710855-13710903)
chr8 (5-45)||(25097387-25097427)
[»] chr7 (22 HSPs)
chr7 (1-54)||(44821956-44822009)
chr7 (7-54)||(7244683-7244730)
chr7 (4-53)||(6601367-6601416)
chr7 (1-48)||(29363515-29363562)
chr7 (11-54)||(39505963-39506006)
chr7 (2-53)||(40252128-40252179)
chr7 (4-54)||(514767-514817)
chr7 (4-54)||(21453294-21453344)
chr7 (4-54)||(25596033-25596083)
chr7 (7-41)||(27517314-27517348)
chr7 (4-54)||(33709448-33709498)
chr7 (11-49)||(39542325-39542363)
chr7 (24-54)||(46082056-46082086)
chr7 (4-46)||(47559629-47559671)
chr7 (11-52)||(46104589-46104630)
chr7 (11-52)||(48917368-48917409)
chr7 (5-49)||(19530185-19530229)
chr7 (2-54)||(24363621-24363673)
chr7 (10-54)||(27378848-27378892)
chr7 (1-53)||(28691856-28691908)
chr7 (4-48)||(33645987-33646030)
chr7 (4-48)||(47941323-47941367)
[»] chr6 (11 HSPs)
chr6 (13-54)||(32387075-32387116)
chr6 (11-54)||(32386583-32386626)
chr6 (4-54)||(1275149-1275199)
chr6 (1-54)||(33787765-33787818)
chr6 (4-51)||(28641772-28641819)
chr6 (4-54)||(3168281-3168331)
chr6 (4-54)||(32386126-32386176)
chr6 (1-54)||(8364996-8365049)
chr6 (2-54)||(6647385-6647437)
chr6 (11-51)||(31812036-31812076)
chr6 (10-54)||(32171403-32171447)


Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 42409376 - 42408887
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaagttgaagacaacttatacacatatcataaactcaaataaggtaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409376 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaagttgaagacaacttatacacatatcataaactcaaataaggtaatc 42409277  T
Q  101 cacacatgccttcaaagagtctcacaaatgctaatactggtagataaactcaaataaatcggtccaaagatgctcttagacaattgtttatctgatgaat 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409276 cacacatgccttcaaagagtctcacaaatgctaatactagtagataaactcaaataaatcggtccaaagatgctcttagacaattgtttatctgatgaat 42409177  T
Q  201 tttgtattaactttcctataactgttacctattatgttcattcctccttttgtttcacctgtatgtacaaacaggacaagacagctttcatattttgcgt 300  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409176 tttgtattaactttcctataactgttacttattatgttcatttctccttttgtttcacctgtatgtacaaacaggacaagacagctttcatattttgcgt 42409077  T
Q  301 tgaagatagggcactcttctgtgaggattgtgacgaatcgattcatttacctggaagcctttctgcaaatcaccagcgcttccttgcgaccggtatccaa 400  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42409076 tgaagatagggcactcttctgtgaggattgtgacgagtcgattcatttacctggaagcctttctgcaaatcaccagcgcttccttgcgaccggtatccaa 42408977  T
Q  401 gtggccatgaaatctaactgcgccaaagacgacgaaaaaactcacttggaaccacctaagaggagtacacatcaagtttctcttgaaact 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42408976 gtggccatgaaatctaactgcgccaaagacgacgaaaaaactcacttggaaccacctaagaggagtacacatcaagtttctcttgaaact 42408887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 24097815 - 24097858
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  24097815 tgttttcataagttatcctggagagcttatgaaaataagctgaa 24097858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 9395130 - 9395180
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  9395130 tataagctgttttcattagttattctgtagagcttatgaaaataagctgaa 9395180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 42621445 - 42621395
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  42621445 tataagctgttttcataagttattctggagaacttgtgaaaataagctgaa 42621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 40158725 - 40158768
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||||||||||||||| || |||||||||    
T  40158725 tgttttcataagttattctggagagcttatgtaattaagctgaa 40158768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36863698 - 36863650
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataag 49  Q
    ||||||||| |||||||||||| |||  |||||||||||||||||||||    
T  36863698 agttataaattgttttcataagctatcttggagagcttatgaaaataag 36863650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 4026816 - 4026867
Alignment:
Q  3 ttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||| |||||||||||| |||| ||| ||| |||||||||||||||||||    
T  4026816 ttataagctgttttcataaattatcctgaagaacttatgaaaataagctgaa 4026867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 10567056 - 10567107
Alignment:
Q  3 ttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||| |||||  ||||||||||||||| ||||||| |||||||    
T  10567056 ttataaactgtttccataaactattctggagagcttgtgaaaattagctgaa 10567107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 15377762 - 15377809
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataa 48  Q
    |||||||| ||||||||||||| |||||||  ||||||||||||||||    
T  15377762 agttataagctgttttcataagctattctgaggagcttatgaaaataa 15377809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 15977992 - 15978035
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||    
T  15977992 tgttttcataagctattttggagagattatgaaaataagctgaa 15978035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 35379079 - 35379036
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||| |||  ||||||||||||||||||||||||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaa 35379036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 1939398 - 1939352
Alignment:
Q  8 aactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||| ||| |||||||||||||| ||||||| ||||    
T  1939398 aactgttttcataagctatactggagagcttatggaaataagttgaa 1939352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 5759645 - 5759595
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||| |||||||||| | || |||||||||||||||    
T  5759645 tataagctgttttcataagctattctggagggtttgtgaaaataagctgaa 5759595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 9556239 - 9556289
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||| ||| || || |||||||||||||||| ||||    
T  9556239 tataaactgttttcataagctatcctagaaagcttatgaaaataagttgaa 9556289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 33319882 - 33319832
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||  |||  |||||| |||||||||||||||||||    
T  33319882 tataaactgttttcataaactatcttggagaacttatgaaaataagctgaa 33319832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 36852472 - 36852522
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||| |||  ||||||||||||| |||||| |||||    
T  36852472 tataaactgttttcataagctatcttggagagcttatggaaataatctgaa 36852522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 42817445 - 42817399
Alignment:
Q  5 ataaactgttttcataagttattctggagagcttatgaaaataagct 51  Q
    |||||||||||||||||| ||||||| |||||||||| || ||||||    
T  42817445 ataaactgttttcataagctattctgaagagcttatggaagtaagct 42817399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9477949 - 9478002
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||  |||||||||||| ||| |||||||| ||||||||||||| ||||    
T  9477949 agttataagttgttttcataagctatcctggagaggttatgaaaataagttgaa 9478002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10563631 - 10563578
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||  |||||||||||| ||| ||| |||||||| ||||||||||||||    
T  10563631 agttataagttgttttcataagctatgctgaagagcttaagaaaataagctgaa 10563578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 10884591 - 10884546
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataag 49  Q
    ||||| ||||||||||||| ||| || |||||||||||||||||||    
T  10884591 tataagctgttttcataagctatcctagagagcttatgaaaataag 10884546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 16398123 - 16398164
Alignment:
Q  13 ttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||  |||||| |||||||||||||||||||    
T  16398123 ttttcataagttatgttggagaacttatgaaaataagctgaa 16398164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 3227751 - 3227703
Alignment:
Q  6 taaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||| |||||||||||| |||| ||||||| || |||||||||||||||    
T  3227751 taaattgttttcataagctattttggagagattttgaaaataagctgaa 3227703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 6993787 - 6993747
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagct 51  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  6993787 tgttttcataagctatgcttgagagcttatgaaaataagct 6993747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 13736363 - 13736319
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataa 48  Q
    ||||| ||||||||||||| ||| || ||||||||||||||||||    
T  13736363 tataagctgttttcataagctatactagagagcttatgaaaataa 13736319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 13869165 - 13869121
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataa 48  Q
    ||||| ||||||||||||||||| ||||||| || ||||||||||    
T  13869165 tataagctgttttcataagttatcctggagaactaatgaaaataa 13869121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 33391027 - 33391079
Alignment:
Q  2 gttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||| ||||||||||| |||||||| || ||||| || ||||||||||||    
T  33391027 gttataagctgttttcatatgttattcttgaaagcttgtggaaataagctgaa 33391079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 36395343 - 36395307
Alignment:
Q  18 ataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  36395343 ataagctattctggagagcttatgaaaattagctgaa 36395307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 40435051 - 40435015
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttat 40  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  40435051 tataagctgttttcataagttatactggagagcttat 40435015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 43600708 - 43600752
Alignment:
Q  7 aaactgttttcataagttattctggagagcttatgaaaataagct 51  Q
    ||||||||||||||||||||| || |||| |||||||| ||||||    
T  43600708 aaactgttttcataagttattatgaagagtttatgaaactaagct 43600752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 398
Target Start/End: Complemental strand, 25414774 - 25414649
Alignment:
Q  273 aggacaagacagctttcatattttgcgttgaagatagggcactcttctgtgaggattgtgacgaatcgattcatttacctggaagcctttctgcaaatca 372  Q
    |||| ||| |||||||||||||||| |||||||| || ||||| |||||  |||| || || ||| | |||||| || |||| || ||||||| ||| ||    
T  25414774 aggataagccagctttcatattttgtgttgaagacagagcactgttctgcaaggactgcgatgaaccaattcatgtagctggtagtctttctggaaacca 25414675  T
Q  373 ccagcgcttccttgcgaccggtatcc 398  Q
    ||||||||||||||| ||||||||||    
T  25414674 ccagcgcttccttgctaccggtatcc 25414649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18628616 - 18628563
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  18628616 agttataaactgttttcataagttatcttggagagcttatggaaataagctgaa 18628563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 8468955 - 8468998
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||| |||||||||||||||||| |||||    
T  8468955 tgttttcataagttattctagagagcttatgaaaataatctgaa 8468998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 4191721 - 4191767
Alignment:
Q  7 aaactgttttcataagttattctggagagcttatgaaaataagctga 53  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||||    
T  4191721 aaactgttttcataagttatcctggagagcgtatggaaataagctga 4191767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 7694080 - 7694030
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||    
T  7694080 tataagctgttttcataagttatcctggagagtttatggaaataagctgaa 7694030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 27721717 - 27721767
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||||||| |||||||||||  ||||||||||||||    
T  27721717 tataagctgttttcataagttatcctggagagcttgcgaaaataagctgaa 27721767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 53673728 - 53673678
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||| |||  ||||||||||||| ||||||||||||    
T  53673728 tataaactgttttcataagctatcttggagagcttatgtaaataagctgaa 53673678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 11802541 - 11802584
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||| |||| |||||||||||||| |||||||||||    
T  11802541 tgttttcataagctattatggagagcttatgagaataagctgaa 11802584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 825552 - 825510
Alignment:
Q  12 gttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||| |||| |||||| |||||||||||||||||||    
T  825552 gttttcataagctattttggagaacttatgaaaataagctgaa 825510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 10194754 - 10194716
Alignment:
Q  14 tttcataagttattctggagagcttatgaaaataagctg 52  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  10194754 tttcataagttatcttggagagcttatgaaaataagctg 10194716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36722742 - 36722692
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagct 51  Q
    ||||||||  |||||| ||||||||| ||| ||||||||||||||||||||    
T  36722742 agttataagttgttttgataagttatcctgaagagcttatgaaaataagct 36722692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 43932435 - 43932485
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| |||||||||||||||||| ||| ||| |||||||||| ||||    
T  43932435 tataaactattttcataagttattctgaagaacttgtgaaaataagatgaa 43932485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 47800623 - 47800673
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||| |||  || |||||||||||||||||||||||    
T  47800623 tataagctgttttcataagctatcttgaagagcttatgaaaataagctgaa 47800673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 55414490 - 55414440
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||| ||||||||||||||||  |||||| |||||||||||||| ||||    
T  55414490 tataaattgttttcataagttatcttggagaacttatgaaaataagttgaa 55414440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43824280 - 43824333
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| || ||||| |||||||| ||||| |||||||| ||||||||||||    
T  43824280 agttataagcttttttcgtaagttatcctggaaagcttatggaaataagctgaa 43824333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 4500848 - 4500896
Alignment:
Q  6 taaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||| |||||||| ||| |||| ||||||| ||||||||||||||||||    
T  4500848 taaattgttttcaaaagctattttggagagattatgaaaataagctgaa 4500896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 50004208 - 50004164
Alignment:
Q  10 ctgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| ||||||||  |||||| |||||||||||||||||||    
T  50004208 ctgttttcctaagttatcttggagaacttatgaaaataagctgaa 50004164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35179136 - 35179189
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  35179136 agttataagctgttttcataagttattatggagaacttatgaaaataagctgaa 35179189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 11639486 - 11639439
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagct 51  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||    
T  11639486 tataaactgtttgcataagttattctagagagcttatgaaaataagct 11639439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 27807105 - 27807145
Alignment:
Q  13 ttttcataagttattctggagagcttatgaaaataagctga 53  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  27807105 ttttcaaaagttattctggagagcttatgaaaataagctga 27807145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 4700136 - 4700086
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||| ||||  ||| |||||||||||||||||||||||||||    
T  4700136 tataaactgtttttataaactatcctggagagcttatgaaaataagctgaa 4700086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 32113658 - 32113708
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||||||||||  ||||||  ||||||||||||||||||    
T  32113658 tataaactgttttcataagttatgttggagattttatgaaaataagctgaa 32113708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 51929847 - 51929799
Alignment:
Q  2 gttataaactgttttcataagttattctggagagcttatgaaaataagc 50  Q
    ||||||| ||||||||||||| |||||| ||||||||||| ||||||||    
T  51929847 gttataagctgttttcataagctattctagagagcttatggaaataagc 51929799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 25479588 - 25479631
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||| ||| || ||||||||||||||||||||||||    
T  25479588 tgttttcataagctatcctagagagcttatgaaaataagctgaa 25479631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 7137068 - 7137018
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||| |||  |||||| |||||||||||||||||||    
T  7137068 tataagctgttttcataagctatcttggagaacttatgaaaataagctgaa 7137018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 7472311 - 7472361
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| |||||| |||||| |||  ||||||||||||||||||||||||||    
T  7472311 tataagctgtttccataagctatcttggagagcttatgaaaataagctgaa 7472361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 26916215 - 26916249
Alignment:
Q  18 ataagttattctggagagcttatgaaaataagctg 52  Q
    |||||||||||||||||||||||| ||||||||||    
T  26916215 ataagttattctggagagcttatggaaataagctg 26916249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 51957456 - 51957418
Alignment:
Q  1 agttataaactgttttcataagttattctggagagctta 39  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  51957456 agttataaattgttttcataagttattctggagaactta 51957418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 1565197 - 1565152
Alignment:
Q  9 actgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||| ||||||||||  |||||||| |||||||||||||||||    
T  1565197 actgtttgcataagttatcttggagagcctatgaaaataagctgaa 1565152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 10199469 - 10199428
Alignment:
Q  13 ttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||| |||| | ||||||||||||||||||||||||    
T  10199469 ttttcataagctattttagagagcttatgaaaataagctgaa 10199428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 37241885 - 37241844
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctg 52  Q
    |||||||||||| ||| || ||||||||||||||||||||||    
T  37241885 tgttttcataagatatcctagagagcttatgaaaataagctg 37241844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 38867899 - 38867854
Alignment:
Q  6 taaactgttttcataagttattctggagagcttatgaaaataagct 51  Q
    |||||||||||||||||||||  || ||| ||||||||||||||||    
T  38867899 taaactgttttcataagttatcttgaagaacttatgaaaataagct 38867854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41853794 - 41853847
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||| | |||||| ||||||||||| |||||||||| ||||||||| |||||    
T  41853794 agttatgagctgtttccataagttattttggagagcttgtgaaaataaactgaa 41853847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 37593744 - 37593704
Alignment:
Q  14 tttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||| |||| || |||||||||||||||||||||||    
T  37593744 tttcataagctattttgaagagcttatgaaaataagctgaa 37593704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 38651494 - 38651454
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagct 51  Q
    |||||||||||| ||| ||||||||||||| ||||||||||    
T  38651494 tgttttcataagctatcctggagagcttataaaaataagct 38651454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 44422699 - 44422747
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctg 52  Q
    ||||| || |||| ||||| ||| |||||||||||||||||||||||||    
T  44422699 tataagctatttttataagctatcctggagagcttatgaaaataagctg 44422747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48282131 - 48282175
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaa 45  Q
    |||| |||||||||||||||||||||  || ||||||||||||||    
T  48282131 agttttaaactgttttcataagttatgttgaagagcttatgaaaa 48282175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 37588423 - 37588380
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  37588423 tgttttcataagttattctggagagcttatggaaataagctgaa 37588380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 27565413 - 27565370
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  27565413 tgttttaataagatattctggagagcttatgaaaataagctgaa 27565370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 37526262 - 37526219
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||| |||||||||||||||| ||||||||||||    
T  37526262 tgttttcataagttgttctggagagcttatggaaataagctgaa 37526219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 7319079 - 7319029
Alignment:
Q  3 ttataaactgttttcataagttattctggagagcttatgaaaataagctga 53  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||||||||    
T  7319079 ttataaactgttttcataagctatcttggagaacttatgaaaataagctga 7319029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 35553258 - 35553208
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| |||||||| | |||||||||||||||||| ||||||||||||    
T  35553258 tataaactattttcatacgctattctggagagcttatggaaataagctgaa 35553208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 3970740 - 3970700
Alignment:
Q  14 tttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  3970740 tttcataagctatactggagagcttatgaaaataagctgaa 3970700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 36638753 - 36638797
Alignment:
Q  10 ctgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||    
T  36638753 ctgttttcataagttatcctagagagcttatggaaataagctgaa 36638797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 15074812 - 15074769
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||    
T  15074812 tgttttcataagttatactggaaagcttatggaaataagctgaa 15074769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 36774774 - 36774727
Alignment:
Q  7 aaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||| ||||| ||| |||||||||||||| ||||||||||||    
T  36774774 aaactgtttttataagctatcctggagagcttatggaaataagctgaa 36774727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 1550897 - 1550947
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||||||| ||| ||||||||||| |||||| ||||    
T  1550897 tataagctgttttcataagttatactgaagagcttatgacaataagatgaa 1550947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 3504760 - 3504794
Alignment:
Q  20 aagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||||||||| ||||||||||||    
T  3504760 aagttattctggagagcttatgtaaataagctgaa 3504794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 3977309 - 3977359
Alignment:
Q  5 ataaactgttttcataagttattctggagagcttatgaaaataagctgaag 55  Q
    |||| ||||||||||||||| || ||||||  |||||||||||||||||||    
T  3977309 ataagctgttttcataagttgttgtggagaaattatgaaaataagctgaag 3977359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 8651422 - 8651373
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||| ||||||    
T  8651422 tataaactgttttcataagctattctgg-gagcttatggaaatatgctgaa 8651373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 4014493 - 4014444
Alignment:
Q  5 ataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||| ||||||||||||| |||  |||||| |||||||||||||||||||    
T  4014493 ataagctgttttcataagctatcttggagaacttatgaaaataagctgaa 4014444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6582905 - 6582864
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatga 42  Q
    |||||||||||||||||||||||| | ||| |||||||||||    
T  6582905 agttataaactgttttcataagttttcctgcagagcttatga 6582864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 10125779 - 10125738
Alignment:
Q  13 ttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||   ||||||||||||||||||||||||||    
T  10125779 ttttcataagttaccatggagagcttatgaaaataagctgaa 10125738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 17258952 - 17258903
Alignment:
Q  5 ataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||| ||||||||||||  ||| ||| |||||||||||||||||||||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataagctgaa 17258903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41957524 - 41957471
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| ||||||||||||| ||| || |||| |||||||||||||| ||||    
T  41957524 agttataagctgttttcataagctatccttgagaacttatgaaaataagatgaa 41957471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 13604913 - 13604869
Alignment:
Q  10 ctgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||||  || |||||||||||||||||| ||||    
T  13604913 ctgttttcataagttatcttgaagagcttatgaaaataagttgaa 13604869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36639519 - 36639567
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataag 49  Q
    ||||||| |||||||||||||| |||  || ||||||||||||||||||    
T  36639519 agttatagactgttttcataagctatcttgaagagcttatgaaaataag 36639567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 37690700 - 37690656
Alignment:
Q  11 tgttttcataa-gttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||    
T  37690700 tgttttcataaagttattatggagagcttatggaaataagctgaa 37690656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 14548784 - 14548741
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  14548784 tgttttcataagttattctggagagcttatggaaataagctgaa 14548741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 34254878 - 34254828
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| |||||||||| ||||||||||| |||||| ||||||||||||    
T  34254878 tataaactattttcataagctattctggagaacttatgtaaataagctgaa 34254828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 2719468 - 2719517
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctga 53  Q
    ||||||||||||||||||| |||  |||||| ||||||||||||||||||    
T  2719468 tataaactgttttcataagctatcttggagaacttatgaaaataagctga 2719517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40665426 - 40665479
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||  ||||||||||||||||  |||||||||||| |||||||||||||    
T  40665426 agttataagatgttttcataagttatcttggagagcttataaaaataagctgaa 40665479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 41633361 - 41633410
Alignment:
Q  5 ataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||| |||||||||| || |||| ||||||||||||||||||||||||||    
T  41633361 ataagctgttttcatcagctattttggagagcttatgaaaataagctgaa 41633410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 3845626 - 3845582
Alignment:
Q  10 ctgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||||  |||||| |||||||||||||||||||    
T  3845626 ctgttttcataagttatcttggagaacttatgaaaataagctgaa 3845582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 8933794 - 8933834
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagct 51  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  8933794 tgttttcataagttatcttggagagcttatgaaaataagct 8933834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 48286883 - 48286831
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctga 53  Q
    ||||||||||||||||||||||||||  || |||||||||  |||||||||||    
T  48286883 agttataaactgttttcataagttatcatgtagagcttatagaaataagctga 48286831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 1816590 - 1816633
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||    
T  1816590 tgttttcataagctatactggagagcttatcaaaataagctgaa 1816633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 44284147 - 44284100
Alignment:
Q  7 aaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||| ||| |||||||||||||  ||||||||||||    
T  44284147 aaactgttttcataagctatcctggagagcttatagaaataagctgaa 44284100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 20502138 - 20502088
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  20502138 tataagctgttttcataagctatcctgaagagcttatgagaataagctgaa 20502088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 24158572 - 24158528
Alignment:
Q  5 ataaactgttttcataagttattctggagagcttatgaaaataag 49  Q
    |||| ||||||||||||| ||| |||||||||||||| |||||||    
T  24158572 ataagctgttttcataagctatcctggagagcttatggaaataag 24158528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 24887347 - 24887303
Alignment:
Q  10 ctgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||| ||| ||||||||||||||  |||||||||||    
T  24887347 ctgttttcataagctatcctggagagcttatgggaataagctgaa 24887303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 48528562 - 48528606
Alignment:
Q  10 ctgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||| |||||||||||| ||||  ||||||||||||    
T  48528562 ctgttttcataagctattctggagagtttatagaaataagctgaa 48528606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 51510256 - 51510216
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagct 51  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  51510256 tgttttcataagttatcgtggagagcttatggaaataagct 51510216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 35220791 - 35220746
Alignment:
Q  6 taaactgttttcataagttattctggagagcttatgaaaataagct 51  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  35220791 taaactgttttcataagctattctggagagcttataaaaataagct 35220746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 20672753 - 20672800
Alignment:
Q  7 aaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||||||    
T  20672753 aaactgtttttataagctatcctggagagcttatgaaaataagctgaa 20672800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 31862500 - 31862543
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  31862500 tgttttcataagttatcctagagagcttatgaaaataagctgaa 31862543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 27028831 - 27028881
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||| |||  ||||||||||||||||||||||||||    
T  27028831 tataagctgttttcataagctatcttggagagcttatgaaaataagctgaa 27028881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 27754412 - 27754454
Alignment:
Q  12 gttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  27754412 gttttcataagctattttggagagcttatgaaaataagctgaa 27754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11795089 - 11795142
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| ||| ||||||||| |||| ||||||||||||| ||||||||||||    
T  11795089 agttataagctgatttcataagctattatggagagcttatggaaataagctgaa 11795142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34551117 - 34551166
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagc 50  Q
    ||||||||  ||||||| |||||||| |||||||||||||||||||||||    
T  34551117 agttataagttgttttcttaagttatcctggagagcttatgaaaataagc 34551166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 44236887 - 44236843
Alignment:
Q  10 ctgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||    
T  44236887 ctgttttcataagctatattggagagcttatgaaaataagctgaa 44236843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 9700000 - 9700051
Alignment:
Q  3 ttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||| ||||||||||| |||||||  ||||||||||||||||||| ||||    
T  9700000 ttataagctgttttcatatgttattcaagagagcttatgaaaataaggtgaa 9700051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 1433556 - 1433598
Alignment:
Q  12 gttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||    
T  1433556 gttttcataagctatcctggagagcttatgaaaataagttgaa 1433598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10075624 - 10075574
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagct 51  Q
    |||||||| || |||||||||| ||| || |||||||||||||||||||||    
T  10075624 agttataagctattttcataagctatcctagagagcttatgaaaataagct 10075574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 10923603 - 10923641
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataag 49  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  10923603 tgttttcattagctattctggagagcttatgaaaataag 10923641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 11494146 - 11494196
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| |||||||||| |||  || |||||||||||||||||||||||    
T  11494146 tataaactattttcataagctatcttgaagagcttatgaaaataagctgaa 11494196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 12361192 - 12361242
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||||||||| |||||||| ||| ||||||| ||||    
T  12361192 tataagctgttttcataagttattcaggagagctaatggaaataagttgaa 12361242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 28769409 - 28769359
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||| |||| ||||||| ||||| ||||||||||||    
T  28769409 tataagctgttttcataagctattttggagagtttatggaaataagctgaa 28769359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 40157519 - 40157585
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaagttgaagacaacttatacacatatcataa 83  Q
    |||||||||| ||||||| ||||||||| |||||||||||      | |||||||||||| ||||||||||||    
T  40157519 tgttttcatatgttattccggagagcttgtgaaaataagc------taaagacaacttattcacatatcataa 40157585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13652212 - 13652260
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataag 49  Q
    ||||||||| |||||| ||||| |||||||||||||||| | |||||||    
T  13652212 agttataaattgtttttataagctattctggagagcttaaggaaataag 13652260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13710855 - 13710903
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataag 49  Q
    ||||||||| |||||| ||||| |||||||||||||||| | |||||||    
T  13710855 agttataaattgtttttataagctattctggagagcttaaggaaataag 13710903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 25097387 - 25097427
Alignment:
Q  5 ataaactgttttcataagttattctggagagcttatgaaaa 45  Q
    |||| ||||||||||||| ||| ||||||||||||||||||    
T  25097387 ataagctgttttcataagctatcctggagagcttatgaaaa 25097427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 44821956 - 44822009
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||    
T  44821956 agttataagctgttttcataagctattctggagaacttatgaaaataagttgaa 44822009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 7244683 - 7244730
Alignment:
Q  7 aaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||    
T  7244683 aaactgttttcataagctatattggagagcttatgaaaataagctgaa 7244730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 6601367 - 6601416
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctga 53  Q
    ||||| ||||||| ||||| |||||||||| |||||||||||||||||||    
T  6601367 tataagctgtttttataagctattctggagtgcttatgaaaataagctga 6601416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29363515 - 29363562
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataa 48  Q
    |||||||| ||||| ||||||||||| |||||||||||||| ||||||    
T  29363515 agttataagctgttatcataagttatcctggagagcttatggaaataa 29363562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 39505963 - 39506006
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||| |||||||||||| ||||| ||||||||||||    
T  39505963 tgttttcataagctattctggagagtttatggaaataagctgaa 39506006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 40252179 - 40252128
Alignment:
Q  2 gttataaactgttttcataagttattctggagagcttatgaaaataagctga 53  Q
    ||||||| || ||||||||||||||  |||||| ||||||||||||||||||    
T  40252179 gttataagctcttttcataagttatcttggagaacttatgaaaataagctga 40252128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 514767 - 514817
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||||| ||| ||||||||||| | |||||||||||||    
T  514767 tataagctgttttcataagctatcctggagagcttgtcaaaataagctgaa 514817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 21453294 - 21453344
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||||||||| ||| || ||||||| ||||| ||||||||||    
T  21453294 tataaactgttttcataagctatcctagagagctaatgaagataagctgaa 21453344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 25596033 - 25596083
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| |||||||||| |||  ||||||||||||||||||||| ||||    
T  25596033 tataaactcttttcataagctatcttggagagcttatgaaaataagttgaa 25596083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 27517348 - 27517314
Alignment:
Q  7 aaactgttttcataagttattctggagagcttatg 41  Q
    |||||||||||||||||||| ||||||||||||||    
T  27517348 aaactgttttcataagttatcctggagagcttatg 27517314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 33709448 - 33709498
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||||||||||||| ||||  | ||||||||||| ||||    
T  33709448 tataaactgttttcataagttattctcgagacttgatgaaaataagttgaa 33709498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 39542363 - 39542325
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataag 49  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  39542363 tgtttccataagttatcctggagagcttatgaaaataag 39542325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 46082056 - 46082086
Alignment:
Q  24 tattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||||||||||||||||||    
T  46082056 tattctggagagcttatgaaaataagctgaa 46082086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 47559671 - 47559629
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaat 46  Q
    ||||| |||||||||||||||||| |||||| |||||||||||    
T  47559671 tataagctgttttcataagttattttggagaacttatgaaaat 47559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 46104630 - 46104589
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctg 52  Q
    |||||||||||| ||| ||| |||||||||||||||||||||    
T  46104630 tgttttcataagctatgctgaagagcttatgaaaataagctg 46104589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 48917409 - 48917368
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctg 52  Q
    |||||||||||| |||  ||||||||||||||||||||||||    
T  48917409 tgttttcataagctatcttggagagcttatgaaaataagctg 48917368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 19530229 - 19530185
Alignment:
Q  5 ataaactgttttcataagttattctggagagcttatgaaaataag 49  Q
    ||||||||||||||||||||||| ||||  ||||||| |||||||    
T  19530229 ataaactgttttcataagttattttggatggcttatggaaataag 19530185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 24363673 - 24363621
Alignment:
Q  2 gttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||  |||||||||||| ||| |||||||| ||||| ||||||||||||    
T  24363673 gttataagttgttttcataagctatcctggagaggttatggaaataagctgaa 24363621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 27378892 - 27378848
Alignment:
Q  10 ctgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||||||  ||| ||||||||||||||||||||| |||||    
T  27378892 ctgttttcataaactatcctggagagcttatgaaaataaactgaa 27378848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28691908 - 28691856
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctga 53  Q
    ||||||| | |||||||||||| ||| ||||||| ||||||||||||| ||||    
T  28691908 agttatacattgttttcataagctatcctggagatcttatgaaaataaactga 28691856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 33646030 - 33645987
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataa 48  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||    
T  33646030 tataaactgttttcataagcta-tctggagagcttatggaaataa 33645987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 47941323 - 47941367
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataa 48  Q
    ||||||||||||||||||| ||| | |||||| ||||||||||||    
T  47941323 tataaactgttttcataagctatcccggagagtttatgaaaataa 47941367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 32387116 - 32387075
Alignment:
Q  13 ttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  32387116 ttttcataagttattctgaagagcttatgaaaataagctgaa 32387075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 32386626 - 32386583
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||||| |||||| |||||||||||||||||||||||||||    
T  32386626 tgttttcattagttatcctggagagcttatgaaaataagctgaa 32386583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 1275149 - 1275199
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||    
T  1275149 tataagctgttttcatatgttatcctggagagcttatggaaataagctgaa 1275199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33787818 - 33787765
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||| |||||||||||||||||  ||||||||||||| ||||| ||||||    
T  33787818 agttataagctgttttcataagttatcttggagagcttatggaaataggctgaa 33787765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 28641819 - 28641772
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagct 51  Q
    |||||||||||||||  || ||||||| ||||||||||||||||||||    
T  28641819 tataaactgttttcaatagctattctgcagagcttatgaaaataagct 28641772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 3168331 - 3168281
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||| |||| ||| |||||||||||| | ||||||||||||    
T  3168331 tataaactgttttcttaagctatcctggagagcttaaggaaataagctgaa 3168281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 32386176 - 32386126
Alignment:
Q  4 tataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||| |||||||||| |||||| ||||| ||||||||||| |||||||||    
T  32386176 tataagctgttttcattagttatcctggaaagcttatgaaagtaagctgaa 32386126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8365049 - 8364996
Alignment:
Q  1 agttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||||||||||||||| |||  ||| || || ||||||||||||||||    
T  8365049 agttataaactgttttcataagctatcatggtgaactgatgaaaataagctgaa 8364996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 6647385 - 6647437
Alignment:
Q  2 gttataaactgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    ||||||| ||||||||||||| |||  | ||||||||||||||||||| ||||    
T  6647385 gttataatctgttttcataagctatcttagagagcttatgaaaataagttgaa 6647437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 31812076 - 31812036
Alignment:
Q  11 tgttttcataagttattctggagagcttatgaaaataagct 51  Q
    |||||||||||| |||  |||||||||||||||||||||||    
T  31812076 tgttttcataagctatcttggagagcttatgaaaataagct 31812036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 32171447 - 32171403
Alignment:
Q  10 ctgttttcataagttattctggagagcttatgaaaataagctgaa 54  Q
    |||||||||| |||||| ||||| |||||||| ||||||||||||    
T  32171447 ctgttttcattagttatcctggatagcttatggaaataagctgaa 32171403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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