View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_23 (Length: 487)
Name: NF18974_high_23
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 33114890 - 33114531
Alignment:
| Q |
9 |
tccaagaatattctccaaattaccttagcaaactgaaaatgaaaaatagactnnnnnnnntcagagggaagaaaataaatgtaggataagctgtgctaga |
108 |
Q |
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| T |
33114890 |
tccaataatattctccaaattaccttagcaaactgaaaatgaaaaatagactaaaaaaaatcagagggaagaaaataaatgtaggataagctgtgctaga |
33114791 |
T |
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| Q |
109 |
cgaatctagaggttcgatgtttgccaaaatcccacaagcacgcagttagcacgttagtagcagttggatcaagtcggacggtgcacttttgtaannnnnn |
208 |
Q |
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| T |
33114790 |
tgaatctagaggttcgatgtttgccaaaatcccacaagcacgcagttagcacgttagtagcagttggatcaagtcggacggtgcacttttgtaatttttt |
33114691 |
T |
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| Q |
209 |
nnaataagaaaatctaaaatttcaaccttgaaatgtgcgtccgatcttgatccaatagtcatcgtcatggcgactgcatgaatgcagggttttggctacc |
308 |
Q |
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| T |
33114690 |
ttaataagaaaatctaaaatttcaaccttgaaatgtgcgtccgatcttgatccaatagtcatcgtcatggcgactgcatgaatgcagggttttggctacc |
33114591 |
T |
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| Q |
309 |
ctataaaatccaatttgtttatggtagaaaattcaaaagtatgtgcacttgatttcaatc |
368 |
Q |
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| T |
33114590 |
ctataaaatccaatttgtttatggtagaaaattcaaaagtatgtgcacttgatttcaatc |
33114531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 33114457 - 33114408
Alignment:
| Q |
438 |
tacagcttccacaaaattgaatcaacgatatgaacaaacagtgtatatga |
487 |
Q |
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| T |
33114457 |
tacagcttccacaaaattgaatcaacgatatgaacaaacagtgtatatga |
33114408 |
T |
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