View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_25 (Length: 484)
Name: NF18974_high_25
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 10112035 - 10111803
Alignment:
| Q |
9 |
gaagaatatacaaaatcatgcaactaacttatgactcccaagaaaataacagaattacaactttccaaaataaactgaatcagcatgttacattacccgt |
108 |
Q |
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| T |
10112035 |
gaagaaaatacaaaatcatgcaactaacttatgactcccaagaaaataacagaatttcaactttccaaaataaactgaatcagcatgctacattacccgt |
10111936 |
T |
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| Q |
109 |
gtcccatatagcaagttttaacttctttccaccaagtgtaacatatttaactttgaagtctacacctgcattaagttcaaaagagacgatgcaaataaat |
208 |
Q |
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| T |
10111935 |
gtcccatatagcaagttttaacttctttccaccaagtgtaacatatttaactttgaagtctacacctgcattatgttcaaaagagacgatgcaaataaat |
10111836 |
T |
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| Q |
209 |
gagtgaagttatacatcaatctataattgagtg |
241 |
Q |
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| T |
10111835 |
gagtgaagttatacattaatctataattgagtg |
10111803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 245 - 484
Target Start/End: Complemental strand, 10111721 - 10111482
Alignment:
| Q |
245 |
accttccccaatgcaatataaggnnnnnnnaggtctatattaacattataggtttatgaattgaacgtaagatggataacaattcaaccactattccgat |
344 |
Q |
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| T |
10111721 |
accttccccaatgcaatataaggtttttttaggtctatattaacattataggtttatgaattgaacgtaagatggataacgattcaaccactattccgat |
10111622 |
T |
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| Q |
345 |
tccttaaatttctcccaacaaccactatgagagagaagcttttttgttgaccaaatgacagtgtttgaactcaacactccagatatataatgaaatagta |
444 |
Q |
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| T |
10111621 |
tccttaaatttctcccaacaaccactatgagagagaagcttttttgttgaccaaatgacagtgtttgaactcaacactccagatagataatgaaatagta |
10111522 |
T |
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| Q |
445 |
aactagctatnnnnnnngatatgtgagaggacaaggaaat |
484 |
Q |
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| T |
10111521 |
aactagctaaaaaaaaagatatgtgagagaacaaggaaat |
10111482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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