View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_high_27 (Length: 474)
Name: NF18974_high_27
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Complemental strand, 35614084 - 35613638
Alignment:
| Q |
13 |
aattcttggaaaaaagccaggagggtccttcaatgtattttnnnnnnntacatctttaattataaatcaactnnnnnnntatcactaacaaacaaattat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35614084 |
aattcttggaaaaaagccaggagggtccttcaatgtattttaaaaaaatacatctttaattataaatcaactaaaaaaatatcactaacaaacaaattat |
35613985 |
T |
|
| Q |
113 |
tgataaatgaatgaataaagaaagaaacctgcatgtcggaaaaagtgagatcgatgtggcagatagaggaacatatgatacggatccgaacttcacgtgg |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35613984 |
tgattaatgaatgaataaagaaagaaacctgcatgtcggaaaaagtgagatcgatgtggcagatagaggaacatatgatacggatccgaacttcacgtgg |
35613885 |
T |
|
| Q |
213 |
cattggtggtgccaccatgatctcttcaatcaccagtgactcaccaggtcttcttgcaaccgccgctacatatagtgttgcagtgatcaaaacagaatga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35613884 |
cattggtggtgccaccatgatctcttcaatcaccagtgactcaccaggtcttcttgcaaccgccgctacatatagtgttgcagtgatcaaaacagaatga |
35613785 |
T |
|
| Q |
313 |
tcagaagttgaaaaacagaaggagaaataaatggaagaagaaacatatatgtatatattttgatgaagcatgaatgaatgaatggagtatacctttgcat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35613784 |
tcagaagttgaaaaacagaaggagaaataaatggaagaagaaacatatatgtatatattttgatgaagcatgaatgaatgaatggagtatacctttgcat |
35613685 |
T |
|
| Q |
413 |
cttataggtttcccttctccttcacttgctgttgctgccattaattc |
459 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35613684 |
cttataggtttcccttctccttcacttgatgttgctgccattaattc |
35613638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University