View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_high_3 (Length: 866)
Name: NF18974_high_3
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 771; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 18 - 852
Target Start/End: Complemental strand, 29057883 - 29057050
Alignment:
| Q |
18 |
aattgctgattcctcttcatggatctaatagattgatagtgttactttacatcttgttaataaaatccaaacatcttacaacttttttccctttttgtgt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29057883 |
aattgctgattcctcttcatggatctaatagattgatagtgttactttacatcttgttaataaaatccaaacatcttacaacttttttccctttttgtgt |
29057784 |
T |
|
| Q |
118 |
acaagcttttaattatgcacaagatacttttgtgcatatattagagagaagaaaaggggtaagttaaagtggatttcacacctttacnnnnnnnngttac |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29057783 |
acaagcttttaattatgcacaagatacttttgtgcatatattagagagaagaaaaggggtaagttaaagtggatttcacacctttacttttttta-ttac |
29057685 |
T |
|
| Q |
218 |
tttaactttcttgcagttggtacccgaataaatccggcttcacaactcgatacacacccaaccagccaaaaccgatgctccaaacggtcggagatgggcc |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29057684 |
tttaactttcttgcagttggtacccgaataaatccggcttcacaacccgatacacacccaaccagcgaaaaccgatgctccaaacggtcggagatgggcc |
29057585 |
T |
|
| Q |
318 |
agagtttttcatccgcggctttctcggggagcggttttaggcctgaaaccacccaaaatggaactgatacttatatgcctaataaaaatataatcatcta |
417 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29057584 |
agagtttttcatctggggctttctcggggagcggttttaggcccgaaaccacccaaaaccgaactgatacttatatgcctaataaaaatataatcatcta |
29057485 |
T |
|
| Q |
418 |
taaataagctccattgtctaaatctcaaaaaccaaaggttcaccatgttaaattatctaaagataaagcttgaatcttactgctctattactgaagaatg |
517 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29057484 |
taaataagctccactgtctaaatctcaaaaaccaaaggttcaccatgttaaattatctaaagataaagcttgaatcttactgctctattactgaagaatg |
29057385 |
T |
|
| Q |
518 |
tttcaacagatggatttaaagcacacataagcaaaaacaaaaatgttaaaatgaatttattaaatacatacatagaagcttttcttccaactttttctct |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29057384 |
tttcaacagatggatttaaagcacacataagcaaaaacaaaaatgttaaaatgaatttattaaatacatacatagaagcttttcttccaactttttctct |
29057285 |
T |
|
| Q |
618 |
gaattttcatccttcaaagtctaacgattgctaaattatttcaacttagctacagaaaagtaacatgtctgcaatttcatcagtctcttctgcaatcaca |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29057284 |
gaattttcatccttcaaagtctaacgattgctaaattatttcaacttagctacagaaaagtaacatgtctgcaatttcatcagtctcttctgcaatcaca |
29057185 |
T |
|
| Q |
718 |
gtcttcacatagaaatcaaacaccaaaaatttcatcccttgccaatcctcacaaataaacaataatctcaaaagacggcgctggtgaattgaattgagta |
817 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29057184 |
gtcttcacatagaaatcaaacaccaaaaatttcatcccttgccaatcctcacaaataaacaataatctcaaaagacggcgctggtgaattgaattgagta |
29057085 |
T |
|
| Q |
818 |
accacatacatataacctgttataatatatcttga |
852 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
29057084 |
accacatacatataacctgttataatatatcttga |
29057050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 529 - 765
Target Start/End: Complemental strand, 2243153 - 2242918
Alignment:
| Q |
529 |
ggatttaaagcacacataagcaaaaaca-aaaatgttaaaatgaatttattaaatacatacatagaagcttttcttccaactttttctctgaattttcat |
627 |
Q |
| |
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|||||| ||||||| ||||| ||||||| |||| | | ||| |||||||| || |||||| |||||| ||||| || || ||||||||||| |||||| |
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| T |
2243153 |
ggattttaagcacaaataaggaaaaacagaaaaaggttaaaggaatttatgaagtacatagatagaaacttttttta-aatattttctctgaactttcat |
2243055 |
T |
|
| Q |
628 |
ccttcaaagtctaacgattgctaaattatttcaacttagctacagaaaagtaacatgtctgcaatttcatcagtctcttctgcaatcacagtcttcacat |
727 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||| ||||||||| ||| | || | || ||||||| |||| ||| |
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| T |
2243054 |
ccttcaaagtctaaggattgctaagttatttcaacttatctagagaaaagtaacatgattgcaatttcttcactgtcatttggaatcaca-tcttggcat |
2242956 |
T |
|
| Q |
728 |
agaaatcaaacaccaaaaatttcatcccttgccaatcc |
765 |
Q |
| |
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| ||| |||||||||||||||||||||||||||||||| |
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| T |
2242955 |
acaaaccaaacaccaaaaatttcatcccttgccaatcc |
2242918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 425 - 472
Target Start/End: Complemental strand, 2243567 - 2243520
Alignment:
| Q |
425 |
gctccattgtctaaatctcaaaaaccaaaggttcaccatgttaaatta |
472 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
2243567 |
gctccattgtctaaatttcagaaaccaaaggttcaccatgttaaatta |
2243520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 531 - 764
Target Start/End: Complemental strand, 31780358 - 31780117
Alignment:
| Q |
531 |
atttaaagcacacataagcaaaaacaaaaatgttaaaatgaatttattaaatacatacatagaagcttttcttccaactttttctctgaattttcatcct |
630 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||| | | ||| |||||||| || ||||||||||||| ||||| || || ||||||||||| ||||||||| |
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| T |
31780358 |
attttaagcacaaataaggaaaaacaaaaaaggttaaaggaatttatgaagtacatacatagaaacttttttta-aatattttctctgaactttcatcct |
31780260 |
T |
|
| Q |
631 |
tcaaagtctaacgattgc----taaattatttcaacttagctacagaaaagtaacatgtctgcaatttcatcagtctct------tctgcaatcacagtc |
720 |
Q |
| |
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||||||||||| |||||| | | ||||||| ||||| ||| || |||||||||||||| ||||||| ||| | | | | || |||||||||| |
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| T |
31780259 |
tcaaagtctaaggattgccaagttatttatttccacttacctagag-aaagtaacatgtctacaatttcttcactgtgtcattaatttggaatcacagtc |
31780161 |
T |
|
| Q |
721 |
ttcacatagaaatcaaacaccaaaaatttcatcccttgccaatc |
764 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
31780160 |
ttcacatacaaaccaaacaccaaaaatttcatcccttgccaatc |
31780117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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