View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_high_32 (Length: 445)

Name: NF18974_high_32
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_high_32
NF18974_high_32
[»] chr4 (7 HSPs)
chr4 (265-427)||(4350272-4350434)
chr4 (40-427)||(4332480-4332867)
chr4 (51-406)||(4323738-4324093)
chr4 (45-395)||(4356588-4356938)
chr4 (219-381)||(4129485-4129647)
chr4 (51-85)||(6592337-6592371)
chr4 (61-185)||(4137360-4137484)
[»] chr6 (15 HSPs)
chr6 (53-239)||(5358205-5358391)
chr6 (53-308)||(5422050-5422305)
chr6 (52-259)||(5173989-5174196)
chr6 (53-182)||(5070545-5070674)
chr6 (52-179)||(5092784-5092911)
chr6 (52-179)||(5160629-5160756)
chr6 (52-182)||(5272856-5272986)
chr6 (53-182)||(5137728-5137857)
chr6 (53-182)||(5149830-5149959)
chr6 (53-380)||(5692853-5693180)
chr6 (286-380)||(5107710-5107804)
chr6 (91-182)||(5366391-5366482)
chr6 (53-179)||(5340401-5340527)
chr6 (45-110)||(5077283-5077348)
chr6 (53-174)||(5107916-5108037)
[»] chr3 (1 HSPs)
chr3 (53-158)||(48016274-48016379)
[»] chr8 (2 HSPs)
chr8 (55-91)||(25951828-25951864)
chr8 (55-91)||(25961079-25961115)
[»] chr7 (1 HSPs)
chr7 (52-128)||(34719945-34720021)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 265 - 427
Target Start/End: Original strand, 4350272 - 4350434
Alignment:
Q  265 tgtcttcgagagttgattaatataatggagtgtcacagaaccataggtcaggcggttcttcccgtattctatgatatatatccatccgatgttcgtcatc 364  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4350272 tgtcttcgagagttgattaatataatggagtgtcacataaccataggtcaggcggttcttcccgtattctatgatatatatccatccgatgttcgtcatc 4350371  T
Q  365 aaacaggtgagtttggtgaagcttttcaaaaagtattgaacaaagttttaaaaggagatgaat 427  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4350372 aaacaggtgagtttggtgaagcttttcaaaaagcattgaacaaagttttaaaaggagatgaat 4350434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 40 - 427
Target Start/End: Original strand, 4332480 - 4332867
Alignment:
Q  40 agtagaagaaggtatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaatta 139  Q
    |||| ||||| ||| |||||||||||||||||  |||| ||||||||||||||||| |||||||| ||||||| | | || ||||||| ||| |||||||    
T  4332480 agtataagaaagtacgatgtgttcttgagttttagaggcgaagacactcgcgcatcattcacttcacatctctctacatctcttcaaagctctggaatta 4332579  T
Q  140 tcgtctttaaggacgatcaatcacttcaaagaggagatcacatctcgtcatcgctaatacaagagattaaagaatctcaaatttctgttattgtcttctc 239  Q
    |||| || ||||||||||| || |||||||| ||| ||| ||||||   | | ||| ||||||  ||  | || ||   |||||||||| ||||||||||    
T  4332580 tcgttttcaaggacgatcattcccttcaaaggggacatcgcatctctaaaacactactacaagcaatccaggagtcgagaatttctgttgttgtcttctc 4332679  T
Q  240 caagaactacgctgattcaccatggtgtcttcgagagttgattaatataatggagtgtcacagaaccataggtcaggcggttcttcccgtattctatgat 339  Q
    ||| |||||||||||||| | ||||||||||| |||||||||  | || |||||||||   ||||||| | | |||| ||| || || || ||||| |||    
T  4332680 caaaaactacgctgattcgcaatggtgtcttcaagagttgatgcaaattatggagtgttttagaaccacaagacaggtggtactgcctgtgttctacgat 4332779  T
Q  340 atatatccatccgatgttcgtcatcaaacaggtgagtttggtgaagcttttcaaaaagtattgaacaaagttttaaaaggagatgaat 427  Q
     || |||| || || ||||||  |||||||||||| |||||| |||||||||||||  | ||||||| |||||||||||  |||||||    
T  4332780 gtacatccctcggaagttcgtagtcaaacaggtgactttggtaaagcttttcaaaatcttttgaacagagttttaaaagtggatgaat 4332867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 51 - 406
Target Start/End: Complemental strand, 4324093 - 4323738
Alignment:
Q  51 gtatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaag 150  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||    | || ||||| ||| |||||||  || | || |||    
T  4324093 gtatgacgtgtttttgagtttccgaggagaagacactcgcgcatcattcatttcacatctcacatcatctcttcagaacgccggaatcctcattttcaag 4323994  T
Q  151 gacgatcaatcacttcaaagaggagatcacatctcgtcatcgctaatacaagagattaaagaatctcaaatttctgttattgtcttctccaagaactacg 250  Q
    || ||||| || |||||||||||||||||||| ||  |||||||| | || |  ||| ||   ||| ||||||||||||| |||||||| || |||||||    
T  4323993 gatgatcagtcgcttcaaagaggagatcacatatccccatcgctagttcacgcaattgaatcttctaaaatttctgttatagtcttctcaaaaaactacg 4323894  T
Q  251 ctgattcaccatggtgtcttcgagagttgattaatataatggagtgtcacagaaccataggtcaggcggttcttcccgtattctatgatatatatccatc 350  Q
    | |||||    |||||||||| |||||||    | ||||||| | |||||||||||| ||| ||||  || || || || ||||| ||| |  |||| ||    
T  4323893 ccgattccaagtggtgtcttcaagagttgtggcaaataatggtgcgtcacagaaccacaggccaggttgtactgcctgtgttctacgatgtcgatccttc 4323794  T
Q  351 cgatgttcgtcatcaaacaggtgagtttggtgaagcttttcaaaaagtattgaaca 406  Q
     || |||||||||||||| |||||||||||| || | |||| |||  |||||||||    
T  4323793 tgaagttcgtcatcaaactggtgagtttggtaaatcatttctaaatctattgaaca 4323738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 395
Target Start/End: Original strand, 4356588 - 4356938
Alignment:
Q  45 aagaaggtatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtc 144  Q
    ||||| ||| |||||||| ||||||||  |||||||||||||| | ||||| |||||||| |||||   |   || ||||||||| |||||||||| |||    
T  4356588 aagaaagtacgatgtgtttttgagttttagaggagaagacactagagcatcattcacttcacatcttactttctctcttcaaaacgccggaattattgtc 4356687  T
Q  145 tttaaggacgatcaatcacttcaaagaggagatcacatctcgtcatcgctaatacaagagattaaagaatctcaaatttctgttattgtcttctccaaga 244  Q
    || ||||||||||| || ||| |||||||||| ||||| ||  ||||| || | ||||  ||  ||   |||  |||| ||||||| ||||||||||| |    
T  4356688 ttcaaggacgatcagtcgcttgaaagaggagagcacatatccacatcgttactccaagcaatcgaaatctctagaattgctgttatcgtcttctccaaaa 4356787  T
Q  245 actacgctgattcaccatggtgtcttcgagagttgattaatataatggagtgtcacagaaccataggtcaggcggttcttcccgtattctatgatatata 344  Q
    |||| ||||||||  |||||||||| ||||||||| || | ||||||  |||| |||| || ||||| || | ||| || || || ||||||||| |  |    
T  4356788 actatgctgattcgtcatggtgtctgcgagagttggttcaaataatgtcgtgttacagtactataggccaagtggtactgccagtgttctatgatgttga 4356887  T
Q  345 tccatccgatgttcgtcatcaaacaggtgagtttggtgaagcttttcaaaa 395  Q
     || ||||| ||||||| |||||| ||||| |||||| || | ||||||||    
T  4356888 cccttccgaagttcgtcgtcaaaccggtgactttggtaaatcatttcaaaa 4356938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 381
Target Start/End: Complemental strand, 4129647 - 4129485
Alignment:
Q  219 aatttctgttattgtcttctccaagaactacgctgattcaccatggtgtcttcgagagttgattaatataatggagtgtcacagaaccataggtcaggcg 318  Q
    ||||||| ||||||| |||||||| |||||||| |||||||| |||||| | |  ||||||||| | ||| |||||||| |||||||||  || |||| |    
T  4129647 aatttctattattgtattctccaaaaactacgcggattcaccgtggtgtatgcaggagttgattcaaatactggagtgttacagaaccactggacaggtg 4129548  T
Q  319 gttcttcccgtattctatgatatatatccatccgatgttcgtcatcaaacaggtgagtttggt 381  Q
    || || || || ||||| ||| | ||||| || |||||||||| |||| |  |||||||||||    
T  4129547 gtactgcctgtgttctacgatgtttatccgtctgatgttcgtcgtcaatctcgtgagtttggt 4129485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 6592371 - 6592337
Alignment:
Q  51 gtatgatgtgttcttgagtttccgaggagaagaca 85  Q
    |||||||||||||||||||||| ||||||||||||    
T  6592371 gtatgatgtgttcttgagtttcagaggagaagaca 6592337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 4137484 - 4137360
Alignment:
Q  61 ttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaaggacgatcaat 160  Q
    ||||| |||||| |||| ||||| || ||  |||| |||||||| || |  |||||||| |||  |||| ||||| | | | |||| ||||||||||| |    
T  4137484 ttcttaagtttcagaggcgaagatacacgtacatctttcacttcacagccttatgcttctctttgaaacgccggattcaccttcttcaaggacgatcact 4137385  T
Q  161 cacttcaaagaggagatcacatctc 185  Q
    | ||||||||||||||| |||||||    
T  4137384 cgcttcaaagaggagattacatctc 4137360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 5358391 - 5358205
Alignment:
Q  53 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagga 152  Q
    |||||||||||||||||||| ||||||| |||||||  || | ||||||||| |||||||||||||||||||||||   |||||| | ||| ||||||||    
T  5358391 atgatgtgttcttgagtttcagaggagaggacactcatgcttgcttcacttcacatctctatgcttcccttcaaaatctcggaatcaacgtttttaagga 5358292  T
Q  153 cgatcaatcacttcaaagaggagatcacatctcgtcatcgctaatacaagagattaaagaatctcaaatttctgttattgtcttctc 239  Q
     ||||| ||||||||||| ||||||||||| ||   ||| ||||| ||||  ||| |||| ||||||||||||||||| || |||||    
T  5358291 tgatcattcacttcaaaggggagatcacatttcaaaatcactaatgcaagcaattcaagattctcaaatttctgttatcgttttctc 5358205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 308
Target Start/End: Original strand, 5422050 - 5422305
Alignment:
Q  53 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagga 152  Q
    ||||||||||||| |||||  ||||||| || ||||| ||||| |||||||| |||||||||||||| |||||||| | ||||||||  || || | |||    
T  5422050 atgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatctctatgcttctcttcaaaattacggaattaaagttttcaggga 5422149  T
Q  153 cgatcaatcacttcaaagaggagatcacatctcgtcatcgctaatacaagagattaaagaatctcaaatttctgttattgtcttctccaagaactacgct 252  Q
    |||| | || |||||||||||||||||||| ||  |||| ||  ||| ||  ||| || | |||| ||| ||| | || || ||||| |  || |||||     
T  5422150 cgatgattcgcttcaaagaggagatcacatttcaacatcactcctacgagcaattgaacagtctcgaatgtctatcatagttttctcaacaaattacgcg 5422249  T
Q  253 gattcaccatggtgtcttcgagagttgattaatataatggagtgtcacagaaccat 308  Q
    ||||||| ||||||||||   |||||| | || |||||||||||||||||||||||    
T  5422250 gattcacaatggtgtcttgatgagttgttgaaaataatggagtgtcacagaaccat 5422305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 5173989 - 5174196
Alignment:
Q  52 tatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagg 151  Q
    ||||| |||||||| |||||| |||| || ||||| ||| | || |||||||| || || || ||||| |||||||||   ||||||| ||| |||||||    
T  5173989 tatgaagtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacacctatacgcttctcttcaaaacaatggaattagcgtttttaagg 5174088  T
Q  152 acgatcaatcacttcaaagaggagatcacatctcgtcatcgctaatacaagagattaaagaatctcaaatttctgttattgtcttctccaagaactacgc 251  Q
    ||||| | ||||||||||||||||||||||| ||   ||| ||| ||||||  ||| |||| |||||||||||||||||  | ||||| || ||||| ||    
T  5174089 acgatgattcacttcaaagaggagatcacatttcaaaatcactactacaagcaattgaagagtctcaaatttctgttatcattttctcaaaaaactatgc 5174188  T
Q  252 tgattcac 259  Q
     |||||||    
T  5174189 agattcac 5174196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 5070674 - 5070545
Alignment:
Q  53 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagga 152  Q
    ||||||||||||| |||||| ||||||| ||||||||| | || |||||||| |||||||||||||| |||| |||||| ||||| |  || |||| |||    
T  5070674 atgatgtgttcttaagtttcagaggagaggacactcgctcttcattcacttcacatctctatgcttctcttcgaaactctggaatcaaagtttttaggga 5070575  T
Q  153 cgatcaatcacttcaaagaggagatcacat 182  Q
     ||  | || ||||||||||||||||||||    
T  5070574 agacgattctcttcaaagaggagatcacat 5070545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 5092784 - 5092911
Alignment:
Q  52 tatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagg 151  Q
    ||||| |||||||| |||||  ||||| |||| ||||| ||||| |||||||| |||||||||||||| ||||||||  | |||||||  || |||| ||    
T  5092784 tatgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgcttcacttcaaaatgctggaattaatgtttttaggg 5092883  T
Q  152 acgatcaatcacttcaaagaggagatca 179  Q
    | ||| | || |||||||||||||||||    
T  5092884 atgatgattcgcttcaaagaggagatca 5092911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 5160756 - 5160629
Alignment:
Q  52 tatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagg 151  Q
    ||||| |||||||| |||||  ||||| |||| ||||| ||||| |||||||| |||||||||||| | ||||||||| | ||| ||| ||| |||| ||    
T  5160756 tatgaagtgttcttaagttttagaggaaaagatactcgtgcatcattcacttcacatctctatgctgcacttcaaaacgctggacttaacgtttttaggg 5160657  T
Q  152 acgatcaatcacttcaaagaggagatca 179  Q
    ||||| | || ||| |||||||||||||    
T  5160656 acgatgattctcttgaaagaggagatca 5160629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 5272856 - 5272986
Alignment:
Q  52 tatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagg 151  Q
    ||||| |||||||| |||||| |||| || ||||| ||| | || |||||||| ||||| || ||||| |||||||||   ||||||| ||| |||||||    
T  5272856 tatgaagtgttcttaagtttcagaggcgaggacacgcgcacttcattcacttcacatctatacgcttctcttcaaaacaatggaattaacgtttttaagg 5272955  T
Q  152 acgatcaatcacttcaaagaggagatcacat 182  Q
    || || | | |||||||||||||||||||||    
T  5272956 acaatgatttacttcaaagaggagatcacat 5272986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 5137857 - 5137728
Alignment:
Q  53 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagga 152  Q
    |||| |||||| ||||||| ||||| |||||||||||  ||||||||||||| |||||  |  | || ||||||||  | |||||||  ||||| | |||    
T  5137857 atgaagtgttcctgagttttcgaggggaagacactcgttcatccttcacttcacatcttcactcatctcttcaaaaggctggaattaaagtcttcatgga 5137758  T
Q  153 cgatcaatcacttcaaagaggagatcacat 182  Q
    |||| | |||||||||||||||||||||||    
T  5137757 cgatgattcacttcaaagaggagatcacat 5137728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 5149959 - 5149830
Alignment:
Q  53 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagga 152  Q
    |||| |||||||| |||||  |||| ||||| || |||||||| |||||||| |||||||||||||| ||||||||  | |||||||  || |||| |||    
T  5149959 atgaagtgttcttaagttttagaggggaagatacgcgcgcatcattcacttcacatctctatgcttctcttcaaaatgctggaattaaagtttttaggga 5149860  T
Q  153 cgatcaatcacttcaaagaggagatcacat 182  Q
     ||| | || ||| ||||||||||||||||    
T  5149859 tgatgattctcttaaaagaggagatcacat 5149830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 380
Target Start/End: Complemental strand, 5693180 - 5692853
Alignment:
Q  53 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagga 152  Q
    |||| |||||||| ||||| ||||| |||||||| || || ||  ||  ||| ||||| |||||||| |||| |||  | ||| || |||| |||| |||    
T  5693180 atgacgtgttcttaagttttcgaggggaagacacccgtgcttcaatcgtttcacatctatatgcttctcttctaaatgctggagttttcgtttttatgga 5693081  T
Q  153 cgatcaatcacttcaaagaggagatcacatctcgtcatcgctaatacaagagattaaagaatctcaaatttctgttattgtcttctccaagaactacgct 252  Q
    |||| | ||||||| |||||||||||||||  |  |||| ||| ||||||  ||  |||| |||  |||||||||||| || ||||| || ||||| ||     
T  5693080 cgatgattcacttccaagaggagatcacattgcaacatcactactacaagcaatcgaagagtctataatttctgttatagttttctcaaaaaactatgca 5692981  T
Q  253 gattcaccatggtgtcttcgagagttgattaatataatggagtgtcacagaaccataggtcaggcggttcttcccgtattctatgatatatatccatccg 352  Q
    |||||  | |||||| |    |||||| |||| ||||||||||||| |||||| ||||| |||   ||  | || || ||||||||| |  |||| || |    
T  5692980 gattcgtcgtggtgtttgaatgagttggttaaaataatggagtgtcgcagaactatagggcagatagtgttgccggtgttctatgatgttgatccttcag 5692881  T
Q  353 atgttcgtcatcaaacaggtgagtttgg 380  Q
    |||| || || |||||||||||||||||    
T  5692880 atgtacgacaccaaacaggtgagtttgg 5692853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 5107804 - 5107710
Alignment:
Q  286 ataatggagtgtcacagaaccataggtcaggcggttcttcccgtattctatgatatatatccatccgatgttcgtcatcaaacaggtgagtttgg 380  Q
    ||||||||||||| ||||| |||||| |||| ||| ||||| || ||||||||| |  |||| || || || ||||||||||| |||||||||||    
T  5107804 ataatggagtgtcgcagaagcatagggcaggtggtgcttccggtgttctatgatgttgatccctcagaagtacgtcatcaaactggtgagtttgg 5107710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 5366391 - 5366482
Alignment:
Q  91 gcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaaggacgatcaatcacttcaaagaggagatcacat 182  Q
    ||||| |||||||| |||||||||||||| ||||||||| ||||| ||   || || | ||||||  | || ||||||||||||||||||||    
T  5366391 gcatctttcacttcgcatctctatgcttctcttcaaaacgccggatttcgtgttttcagggacgacgattcgcttcaaagaggagatcacat 5366482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 5340401 - 5340527
Alignment:
Q  53 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagga 152  Q
    |||| ||||| ||||||||  ||||  | |||||||| | |||||||||||| |||||||||||| | ||||||||  | |||||||  || ||||  ||    
T  5340401 atgaagtgtttttgagttttagagggaaggacactcgtgtatccttcacttcacatctctatgctgcacttcaaaatgctggaattactgtttttagaga 5340500  T
Q  153 cgatcaatcacttcaaagaggagatca 179  Q
    |||| | || ||||||||||| |||||    
T  5340501 cgatgattcgcttcaaagaggtgatca 5340527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 5077348 - 5077283
Alignment:
Q  45 aagaaggtatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatct 110  Q
    |||||| |||||||||||||| |||||| ||||||  |||||||| | ||| |||||||| |||||    
T  5077348 aagaagttatgatgtgttcttaagtttcagaggagtggacactcgtgaatctttcacttcacatct 5077283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 5108037 - 5107916
Alignment:
Q  53 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagga 152  Q
    |||| |||||| | |||||| ||||  |||| ||||| || ||||||||||| |||||||||||||| ||||| ||| | ||||| | ||| ||||  ||    
T  5108037 atgacgtgttcctaagtttcagaggcaaagatactcgtgcttccttcacttcacatctctatgcttctcttcagaacgctggaatcaacgtttttagaga 5107938  T
Q  153 cgatcaatcacttcaaagagga 174  Q
    |||| | || ||| ||||||||    
T  5107937 cgatgattcgcttaaaagagga 5107916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 48016379 - 48016274
Alignment:
Q  53 atgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaactccggaattatcgtctttaagga 152  Q
    |||| |||||| | ||||| |||||  ||||||| || || ||||| ||||| |||||||||||||| ||||||||||| ||||||| ||| | || |||    
T  48016379 atgaagtgttcctaagttttcgaggcaaagacacacgtgcttcctttacttcgcatctctatgcttctcttcaaaactctggaattaacgtttataggga 48016280  T
Q  153 cgatca 158  Q
    ||||||    
T  48016279 cgatca 48016274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 25951864 - 25951828
Alignment:
Q  55 gatgtgttcttgagtttccgaggagaagacactcgcg 91  Q
    |||||||| |||||||||||||||||||| |||||||    
T  25951864 gatgtgtttttgagtttccgaggagaagatactcgcg 25951828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 25961115 - 25961079
Alignment:
Q  55 gatgtgttcttgagtttccgaggagaagacactcgcg 91  Q
    |||||||| |||||||||||||||||||| |||||||    
T  25961115 gatgtgtttttgagtttccgaggagaagatactcgcg 25961079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 34720021 - 34719945
Alignment:
Q  52 tatgatgtgttcttgagtttccgaggagaagacactcgcgcatccttcacttctcatctctatgcttcccttcaaaa 128  Q
    ||||||||||||||||||||| |||| ||||| ||||| |||   |||| ||| ||||||||| | || ||||||||    
T  34720021 tatgatgtgttcttgagtttcagaggggaagatactcgtgcaagattcatttcacatctctatacctctcttcaaaa 34719945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University