View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_4 (Length: 793)
Name: NF18974_high_4
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 421 - 775
Target Start/End: Original strand, 9462692 - 9463048
Alignment:
| Q |
421 |
tccttgaaaacgt--tacatcctatcataactgtatcaaatgtatgatcaaatggttgtgactataatcctctagaaatcaatagcatcatcaatttgga |
518 |
Q |
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| T |
9462692 |
tccttgaaaacgtgttacatcctatcataactgtatcaaatgtatgatcaaatggttgtgactataatcctctagaaatcaatagcatcatcaatttgga |
9462791 |
T |
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| Q |
519 |
ttctaaacaattggaacagcagcattaagctgaaatgattggatgagatcagaatctggcaaactgagaggaggcaaagaaaatgcactttgtgttgaac |
618 |
Q |
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| T |
9462792 |
ttctaaacaattggaacagcagcattaagctgaaatgattggatgagatcagaatctggcaaactgagaggaggcaaagaaaatgcactttgtgttgaac |
9462891 |
T |
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| Q |
619 |
taccttttctcatttcttgcattgtaagtaaagccgcaaccgtgtttctgaaaattccttcaccagctaccactatagcttcttttgcttcttttgctct |
718 |
Q |
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| T |
9462892 |
taccttttctcatttcttgcattgtaagtaaagccgcaaccgtgtttctaaaaattccttcaccagctaccactatagcttcttttgcttcttttgctct |
9462991 |
T |
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| Q |
719 |
ttcagcttcttcctcaaccggaaacactgcatcgattatggtttcacattccttcac |
775 |
Q |
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| T |
9462992 |
ttcagcttcttcctcaaccggaaacactgcatcgattatggtttcacattccttcac |
9463048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 44 - 350
Target Start/End: Original strand, 9462316 - 9462622
Alignment:
| Q |
44 |
acatttcttctgaaatacaagaatcaccaactatcaaatacctgttttttatttcttctgtaactacaaagaaaatcaatacattgatcatatcaaacca |
143 |
Q |
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| T |
9462316 |
acatttcttctgaaatacaagaatcaccaactatcaaatacctgttttttatttcttctgtaattacaaagaaaatcaatacattgatcatatcaaacca |
9462415 |
T |
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| Q |
144 |
aatatgatgtaattaccaaaataattaatgactaaatatttaacctagaaaaggcttttgttttcatctcaagtaatcgacatgtttcttaatcaaaagc |
243 |
Q |
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| T |
9462416 |
aatatgatgtaattaccaaaataattaatgactaaatatttaacctagaaaaggcttttgttttcatctcaagtaatagacatgtttcttaatcaaaagc |
9462515 |
T |
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| Q |
244 |
agaatgtaaattaacatcaactatctatcatgtgttcgtctcaagcaagatgctcgattggtgagttgaggtacatcgaaggagtaacatcgagaaggtc |
343 |
Q |
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| T |
9462516 |
agaatgtaaattaacatcaactatctatcatgtgttcgtctcaagcaagatgctcgattggtgagttgaggtacatcgaaggagtaacatcgagaaggtc |
9462615 |
T |
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| Q |
344 |
cagaatt |
350 |
Q |
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| T |
9462616 |
cagaatt |
9462622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 607 - 686
Target Start/End: Original strand, 9457564 - 9457644
Alignment:
| Q |
607 |
tttgtgttgaactacc-ttttctcatttcttgcattgtaagtaaagccgcaaccgtgtttctgaaaattccttcaccagct |
686 |
Q |
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| T |
9457564 |
tttgtgttaaactaccattttctcatttcttgcattgtaagtaaaatttcaaccgtgtttctgaatgttccttcaccagct |
9457644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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