View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_41 (Length: 400)
Name: NF18974_high_41
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_41 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 24846821 - 24847196
Alignment:
| Q |
16 |
cacatggaacttagtatatgtagtctatctcacacttggcatcggttacttgttcccatggaacgcattcatcacagccgttgactatttctcatatctt |
115 |
Q |
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| T |
24846821 |
cacatggaacttagtatatatagtctatctcacacttggcatcggttacttgttcccatggaacgcattcatcacagccgttgactatttctcatatctt |
24846920 |
T |
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| Q |
116 |
taccctcatgccagcgttgaccgtatctttgctcttgtttcctcgctatctagtcttgctggtctctttctcatcatccttaaccgccacaaatctcatg |
215 |
Q |
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| T |
24846921 |
taccctcatgccagcgttgaccgtatctttgctcttgtttcctcgctatctagtcttgttggtctctttctcatcatccttaaccgccacaaatctcatg |
24847020 |
T |
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| Q |
216 |
cttatgtgaggatcaatgttggtcttgcattgtttgttgtttcgctcgtgatagttccactgcttgatgtggtttatgttaagggtagggttgggttgta |
315 |
Q |
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| T |
24847021 |
cttatgtgaggatcaatgttggtcttgcattgtttgttgtttcgctcgtgatagttccactgcttgatgtggtttatgttaagggtacggttgggttgta |
24847120 |
T |
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| Q |
316 |
taatgggttctatgttactgttgcggcggttgcggtttctggtgtggctaatgctttggtgcagggatatattctt |
391 |
Q |
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| T |
24847121 |
taatgggttctatgttactgttgcggcggttgtggtttctggtgtggctaatgctttggtgcagggatctattctt |
24847196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 237520 - 237447
Alignment:
| Q |
71 |
ccatggaacgcattcatcacagccgttgactatttctcatatctttaccctcatgccagcgttgaccgtatctt |
144 |
Q |
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| T |
237520 |
ccatggaatgcattcatcacagccgttgattatttctcttatctttaccctgaagcaagcgttgatcgcatctt |
237447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 381
Target Start/End: Complemental strand, 237385 - 237210
Alignment:
| Q |
206 |
aaatctcatgcttatgtgaggatcaatgttggtcttgcattgtttgttgtttcgctcgtgatagttccactgcttgatgtggtttatgttaagggtaggg |
305 |
Q |
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||||||||||||||||| ||||| || | |||||||| | |||||||||||| | || | ||||| || ||||||| |||||||||||||| ||| |
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| T |
237385 |
aaatctcatgcttatgttaggattaacttgggtcttgctctttttgttgtttcgttgctgcttgttcctttgattgatgttttttatgttaagggtcggg |
237286 |
T |
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| Q |
306 |
ttgggttgtataatgggttctatgttactgttgcggcggttgcggtttctggtgtggctaatgctttggtgcaggg |
381 |
Q |
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| T |
237285 |
tcgggttttacggtgggttttatgttgctgttggtgctgttggactttcgggtgttgctgatgcattggtgcaggg |
237210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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