View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_49 (Length: 375)
Name: NF18974_high_49
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 19887975 - 19888231
Alignment:
| Q |
19 |
agaccagacttggcaacaaggtgggaacatgttgtccaaagttgtggcatttcttgctttcttgaagctattagtactttcatcacatcgtctattgagg |
118 |
Q |
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| T |
19887975 |
agaccagacttggcaacaaggtgggaacatgttgtccaaagttggggcatttcttgctttcttgaagctattagtactttcatcacatcgtctattgagg |
19888074 |
T |
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| Q |
119 |
ctttctctaccatgctcactagttgcttctgcaaatcaatcaagcaatgagagttagatnnnnnnnttaacaaataatttaatattggtagatcaagtcg |
218 |
Q |
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| T |
19888075 |
ctttctctaccatgctcactagttgcttctacaaatcaatcaagcaatgagagttagat-aaaaaattaacaaataatttaatattggtagatcaagtcg |
19888173 |
T |
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| Q |
219 |
taaatctaactttgtattttctaattggagtaatcttttatagtatgtttgaagtata |
276 |
Q |
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| T |
19888174 |
taaatctaactttgtattttctaattggagttatcttttgtagtatgttttaagtata |
19888231 |
T |
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Back To:
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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 35319144 - 35319029
Alignment:
| Q |
34 |
acaaggtgggaacatgttgtccaaagttgtggcatttcttgctttcttgaagctattagtactttcatcacatcgtctattgaggctttctctaccatgc |
133 |
Q |
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||||||||||||||||| ||||| || || |||| ||||| |||||||| |||| || |||||||| ||||| || || |||||||| || ||||||| |
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| T |
35319144 |
acaaggtgggaacatgtggtccatagctggtgcatgtcttgttttcttgatgctaggagcactttcattacatcttcaatcgaggctttttccaccatgc |
35319045 |
T |
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| Q |
134 |
tcactagttgcttctg |
149 |
Q |
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|| ||||||| ||||| |
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| T |
35319044 |
tcgctagttgtttctg |
35319029 |
T |
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