View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_high_5 (Length: 709)

Name: NF18974_high_5
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_high_5
NF18974_high_5
[»] chr5 (1 HSPs)
chr5 (19-696)||(10499108-10499789)


Alignment Details
Target: chr5 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 19 - 696
Target Start/End: Complemental strand, 10499789 - 10499108
Alignment:
Q  19 gtaagaataacggaaagtgtgcatatttgaaactggaaaacttaactaactacattcttagaagattacccaccttgtcaaactggttgaatcaattgac 118  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10499789 gtaagaataatggaaagtgtgcatatttgaaactcgaaaacttaactaactacattcttagaagattacacaccttgtcaaactggttgaatcaattgac 10499690  T
Q  119 taagtttcgaaaaattaagcaatattacaatcagtatgctatgttgatgaattttgttttaatgtatcattcaattttacatgcagggctctgcattcgt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  10499689 taagtttcgaaaaattaagcaatattacaatcagtatgctatgttgatgaattttgttttaatgtatcattcaattttacatgcagggctccacattcgt 10499590  T
Q  219 tgcagaatcttttttgggatacttggtaaaccgtagtaaagtaattcaaatgctgatagaagctctgggtgagtgtctctaaagttaaactcctaaaagt 318  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10499589 tgcagagtcttttttgggatacttggtaaaccgtagtaaagtaattcaaatgctgatagaagctcttggtgagtgtctctaaagttaaactcctaaaagt 10499490  T
Q  319 ttgtataatttgtttcttgttctatttctactatttaacacatattcttcatttaatctttgttcctttgtgattaaagaacattagtccgtatcattta 418  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||    
T  10499489 atgtataatttgtttcttgttctatttctactatttaacacatattcttcatttaatctttgttcctttgtgattaaataacattagtccctatcaatta 10499390  T
Q  419 a----ttaagctatgttatttctacttttgtgttagtgttgtcattgttctaagaggatttatttgtgattctcttctttctaacggctacttcattgtt 514  Q
    |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10499389 atcttttaagctatgttatttctacttttgtgttagtgttgtcattgttctaagaggatttatttgtgattctcttctttctaacggctacttcattgtt 10499290  T
Q  515 catgtagatctctatcttttaggaacggtgatgctagtctttggaatgggtctgtatgagctctttgtgagtaatcttgatagtgcaagctctctgcaag 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10499289 catgtagatctctatcttttaggaacggtgatgctagtctttggaatgggtctgtatgagctctttgtgagtaatcttgatagtgcaagctctctgcaag 10499190  T
Q  615 atcaaaaaccttctgatagatcaaatctatttggcatattcactttgaaggttagcttttagacattctttttcctagtcaa 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10499189 atcaaaaaccttctgatagatcaaatctatttggcatattcactttgaaggttagcttttagacattctttttcctagtcaa 10499108  T

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