View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_55 (Length: 360)
Name: NF18974_high_55
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 56059762 - 56060102
Alignment:
| Q |
12 |
tgataaaccgaaccaattctgataatcttcaactccggatgctgatgatgtaggagatctcaccacaatatgaagcaataataa---------acaaagg |
102 |
Q |
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| T |
56059762 |
tgataaaccgaacaaattctgataatcttcaactcctgatgctgatgatggaggagatcctaccacaatattaagcaataataataataataaacaaagg |
56059861 |
T |
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| Q |
103 |
gaaaacaacatcacaaaaacgttgttgccactcaagttgctcatcgtctttgagtttgtttatcaacttaatttggcttaacttacgtaagagatatact |
202 |
Q |
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| T |
56059862 |
gaaaacaacatcacaaaaacgttgttgccactcaagttgctcatcgtctttgagtttgtttatcaactt----tggcttaacttacgtaagagatatact |
56059957 |
T |
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| Q |
203 |
attaatttgaattgaactcctcctcaactcaaaacaacatacttatatatataatgagtcgataccttcttctgctttttatataagccacattccattc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56059958 |
attaatttgaattgaactcctcctcaactcaaaacaacatacttata----taatgagtcgataccttcttctgctttttatataagccacattccattc |
56060053 |
T |
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| Q |
303 |
ctcatatacatttagctctcttaggtttgactttgcattgcagtataat |
351 |
Q |
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| T |
56060054 |
ctcatatacatttagctctcttaggtttgactttgcattgcagtataat |
56060102 |
T |
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