View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_57 (Length: 357)
Name: NF18974_high_57
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 41761590 - 41761249
Alignment:
| Q |
1 |
aataatataattaagtaaagctaaatattaagacggcactatatgttt-gtaatcatgtcataaaagcaccaattaattggataccatcagaagaactct |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41761590 |
aataatataattaagtaaagctaaatattaagacggcactatatgttttgtaatcatgtcataaaagcaccaattaattggatactatcagaagaactct |
41761491 |
T |
|
| Q |
100 |
attgttaattatattcgaacaagagtagtactaaaatgagtaaccttggattaaatcccgtcatctatcatttcttatgaaatgatacaatcttttttag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41761490 |
tttgttaattatattcgaacaagagtagtactaaaatgagtaaccttggattaaatcccgtcatctatcatttcttatgaaatgatacaatcttttttag |
41761391 |
T |
|
| Q |
200 |
tttaaagtggatcctctaatgaatcatatgactagaagcaaattggttttctctcctaataagaccatgtcatttaaggacataaaaatatccaaatctt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41761390 |
tttaaagtggatcctctaatgaatcatatgactagaagcaaattggttttctctcctaataagaccatgtcatttaaggacataaaaatatccaaatctt |
41761291 |
T |
|
| Q |
300 |
tctgtttctgtgcatgtatcaattcatgttaatcaagctatt |
341 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |||| |
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| T |
41761290 |
tctgttcctgtgcatgtatcaattcatgttaatcaagttatt |
41761249 |
T |
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