View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_58 (Length: 356)
Name: NF18974_high_58
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 142 - 339
Target Start/End: Complemental strand, 44204680 - 44204483
Alignment:
| Q |
142 |
gagataagattgacaacagaaaagtaagaatcgtttctttcaaaaacaacatctctagtttgatgcgtttgtcgtaaatacaaaattagaacagttgaaa |
241 |
Q |
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| T |
44204680 |
gagataagattgacaacagaaaagtaagaatcgtttctttcaaaaacaacatctctagtttgatgtgtttgtcgtaaatacaaaatcagaacagttgaaa |
44204581 |
T |
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| Q |
242 |
ttattccattattattagattagatacattaaaagaaggtggatatagtatgcatatcatttaactgaaatggtgataatttatatttatatctttta |
339 |
Q |
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| T |
44204580 |
ttattccattattattagattagatacattaaaagaaggtggatatagtatgcatatcatttaactgaaatggtgataatttatatttatatctttta |
44204483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 44204806 - 44204727
Alignment:
| Q |
10 |
atgaatattgttgatccagtgcgctgtctaccacacccatgaaaggtgattcatataaacaacaattggtaacacaagtgtg |
91 |
Q |
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| T |
44204806 |
atgaatattgttgatccagtgc--tgtctaccacacccatgaaaggtgattcatataaacaacaattggtaacacaagtgtg |
44204727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 339
Target Start/End: Original strand, 49871082 - 49871232
Alignment:
| Q |
191 |
catctctagtttgatgcgtttgtcgtaaatacaaaattagaacagttgaaattattccatta---ttattagattagatacattaaaagaaggtggatat |
287 |
Q |
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| T |
49871082 |
catctctagtt-gatgtgcttgccctaaatactaaatcagtacagttgaaattatttcattattattattagattagatacattaaaagaaggtggaagc |
49871180 |
T |
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| Q |
288 |
agtatgcatatcatttaactgaaatggtgataatttatatttatatctttta |
339 |
Q |
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| T |
49871181 |
aatatgcatatcagttaactgatacagtgatagtttatattgatatctttta |
49871232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 49870960 - 49871029
Alignment:
| Q |
10 |
atgaatattgttgatccagtgcgctgtctaccacacccatgaaaggtgattcatataaacaacaattggtaa |
81 |
Q |
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| T |
49870960 |
atgaatactgatgatccagtgt--tgtctaccacacccatgaaaggtgattcgtataaacgacaattggtaa |
49871029 |
T |
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