View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_high_61 (Length: 351)

Name: NF18974_high_61
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_high_61
NF18974_high_61
[»] chr4 (4 HSPs)
chr4 (44-218)||(1053855-1054029)
chr4 (2-218)||(13924794-13925017)
chr4 (133-218)||(13925611-13925696)
chr4 (82-220)||(53777820-53777958)
[»] chr1 (4 HSPs)
chr1 (243-333)||(48131828-48131918)
chr1 (2-218)||(4059874-4060097)
chr1 (137-201)||(4058892-4058956)
chr1 (143-218)||(26240843-26240918)
[»] chr8 (5 HSPs)
chr8 (44-201)||(27243464-27243621)
chr8 (44-201)||(27255039-27255196)
chr8 (78-214)||(42094651-42094787)
chr8 (143-218)||(42094010-42094085)
chr8 (172-218)||(35399944-35399990)
[»] chr5 (4 HSPs)
chr5 (78-214)||(33087373-33087509)
chr5 (62-218)||(35524768-35524924)
chr5 (62-218)||(4095113-4095268)
chr5 (143-218)||(33086730-33086805)
[»] chr3 (2 HSPs)
chr3 (78-214)||(47571846-47571982)
chr3 (143-218)||(47571197-47571272)
[»] scaffold0219 (1 HSPs)
scaffold0219 (89-205)||(8361-8475)
[»] chr2 (3 HSPs)
chr2 (62-209)||(4716123-4716270)
chr2 (143-218)||(44987511-44987586)
chr2 (143-214)||(44986817-44986888)
[»] chr7 (3 HSPs)
chr7 (68-218)||(41617193-41617343)
chr7 (171-218)||(36611494-36611541)
chr7 (172-218)||(3849598-3849644)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 1053855 - 1054029
Alignment:
Q  44 ggtgatggaaccaacaacagggataggagaagagatgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatcta 143  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||||||| || |||||||||| |||||||  ||||||||||||| |    
T  1053855 ggtgatggaactaacaacatggataggagaagagatgagacaaaattgtatgcggaaagatatagatgttcttaattttgtttgcaacaaatatgatcca 1053954  T
Q  144 ttgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    |||||||||| |||| |||||||||| ||||| ||| |||||| | |||||||||||| ||||| ||||||||||    
T  1053955 ttgattaaattcaaccgtaatttcttcatggttcactgatgaggggtttaattgatccctcatcttagaatccac 1054029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 13925017 - 13924794
Alignment:
Q  2 acttggaggagaagagcattgatacaagcgaaaggaagggtcggtgatggaaccaacaacagggataggagaagagatgagaca-------aaattgtgt 94  Q
    ||||||||||||||||| | |||||||| |||| ||||||| |||| || ||| ||||||| ||||||||||| ||||||||||       ||||||| |    
T  13925017 acttggaggagaagagcgtggatacaagagaaatgaagggtgggtgttgaaactaacaacatggataggagaaaagatgagacatgtgacaaaattgtat 13924918  T
Q  95 gtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgtaatttctttatggtccaccgatgagagatttaa 194  Q
     |||||| ||||| |||||| ||| |||||||| ||||||||||||  ||||||||||| |||| ||| ||| ||  |||||||||| |||| |||||||    
T  13924917 ttggaaacatgtagatgttcctaattttgtttccaacaaatatgatgcattgattaaattcaaccgtacttttttcgtggtccaccggtgagggatttaa 13924818  T
Q  195 ttgatccttcatcctagaatccac 218  Q
    |||| || ||| ||||||||||||    
T  13924817 ttgagccctcaccctagaatccac 13924794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 13925611 - 13925696
Alignment:
Q  133 aatatgatctattgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    ||||||||| |||||||| ||| ||| ||||||||||| |||||||||| |||| || ||| ||||||| |||   ||||||||||    
T  13925611 aatatgatccattgattagatctaaccgtaatttctttgtggtccaccggtgagggacttagttgatccctcactttagaatccac 13925696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 53777958 - 53777820
Alignment:
Q  82 gacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgtaatttctttatggtccaccg 181  Q
    |||||||||||||||| | | ||||||| ||||| ||  || |||  |||||||  || ||||| |||  ||||||| ||| || |||  ||||||||||    
T  53777958 gacaaaattgtgtgtgaacaaatgtaaaagttctcaatattatttttaacaaatcggaactattcatttcatccaacggtatttccttcgtggtccaccg 53777859  T
Q  182 atgagagatttaattgatccttcatcctagaatccactg 220  Q
     ||||||| |||||||  || |||||||| |||||||||    
T  53777858 gtgagagacttaattggaccctcatcctaaaatccactg 53777820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 48131828 - 48131918
Alignment:
Q  243 aaaatacatgtatcaaattaaaagaagattaaattacaagatagtatcacctttatattcgtaaaaaatctacataacacacattatatat 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48131828 aaaatacatgtatcaaattaaaagaagattaaattacaagatagtatcacctttatattcgtaaaaaatctacataacacacattatatat 48131918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 4059874 - 4060097
Alignment:
Q  2 acttggaggagaagagcattgatacaagcgaaaggaagggtcggtgatggaaccaacaacagggataggagaagagatga-------gacaaaattgtgt 94  Q
    ||||||||||||||||| | |||||||| |||| ||||||| |||| || ||| ||||||| |||||| |||| ||||||       ||||||||||| |    
T  4059874 acttggaggagaagagcgtggatacaagagaaacgaagggtgggtgttgaaactaacaacatggatagaagaaaagatgagacatgagacaaaattgtat 4059973  T
Q  95 gtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgtaatttctttatggtccaccgatgagagatttaa 194  Q
    ||||||| ||||| |||||| ||| |||||||| ||||||||||||  |||||||||||||||  ||| ||||||  |||||||||| |||  |||||||    
T  4059974 gtggaaacatgtagatgttcctaattttgtttccaacaaatatgatgcattgattaaatccaatcgtactttcttcgtggtccaccggtgacggatttaa 4060073  T
Q  195 ttgatccttcatcctagaatccac 218  Q
    |||| || ||||||||||||||||    
T  4060074 ttgagccctcatcctagaatccac 4060097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 4058956 - 4058892
Alignment:
Q  137 tgatctattgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatcc 201  Q
    ||||| |||||||| ||| ||| ||||||||||| ||||||||||||||| || ||| |||||||    
T  4058956 tgatccattgattagatctaaccgtaatttctttgtggtccaccgatgagggacttagttgatcc 4058892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 26240843 - 26240918
Alignment:
Q  143 attgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    ||||||| |||| ||| ||| |||||| ||||||||||| |||| || |||||||| || ||| ||||||||||||    
T  26240843 attgattcaatcaaacggtattttcttcatggtccaccggtgagggacttaattgaaccctcaccctagaatccac 26240918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 27243621 - 27243464
Alignment:
Q  44 ggtgatggaaccaacaacagggataggagaagagatgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatcta 143  Q
    ||||||||||| | ||||| ||||| ||||||||||||||||||||||| || |||||||| || |||||||||| |||||||  || |||||||||| |    
T  27243621 ggtgatggaactatcaacatggataagagaagagatgagacaaaattgtatgcggaaagatatagatgttcttaattttgtttgcaataaatatgatcca 27243522  T
Q  144 ttgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatcc 201  Q
    |||||||||| |||||||||||||||  |||||||||| |||| || |||||||||||    
T  27243521 ttgattaaattcaactgtaatttcttcgtggtccaccggtgagggacttaattgatcc 27243464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 27255196 - 27255039
Alignment:
Q  44 ggtgatggaaccaacaacagggataggagaagagatgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatcta 143  Q
    ||||||||||| | ||||| ||||| ||||||||||||||||||||||| || |||||||| || |||||||||| |||||||  || |||||||||| |    
T  27255196 ggtgatggaactatcaacatggataagagaagagatgagacaaaattgtatgcggaaagatatagatgttcttaattttgtttgcaataaatatgatcca 27255097  T
Q  144 ttgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatcc 201  Q
    |||||||||| |||||||||||||||  |||||||||| |||| || |||||||||||    
T  27255096 ttgattaaattcaactgtaatttcttcgtggtccaccggtgagggacttaattgatcc 27255039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 42094651 - 42094787
Alignment:
Q  78 atgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgtaatttctttatggtcc 177  Q
    ||||||||||||||||||||| ||| || | ||| ||| |  ||| |||   || ||||||||| ||||||||||||||||||||||||||| ||| | |    
T  42094651 atgagacaaaattgtgtgtgggaaggtgcagatgctctcatttttatttttgacgaatatgatccattgattaaatccaactgtaatttcttcatgcttc 42094750  T
Q  178 accgatgagagatttaattgatccttcatcctagaat 214  Q
    | || |||| || ||||||||||| ||| ||||||||    
T  42094751 atcggtgagggacttaattgatccctcaccctagaat 42094787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 42094085 - 42094010
Alignment:
Q  143 attgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    ||||||||||| ||||||||||||||| ||| | ||||| |||| || ||||||||||| ||| ||||||||||||    
T  42094085 attgattaaattcaactgtaatttcttcatgcttcaccggtgagggacttaattgatccctcaccctagaatccac 42094010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 35399944 - 35399990
Alignment:
Q  172 tggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    |||||||||| |||| ||||| |||||||| ||||||||||||||||    
T  35399944 tggtccaccggtgagggatttgattgatccctcatcctagaatccac 35399990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 33087373 - 33087509
Alignment:
Q  78 atgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgtaatttctttatggtcc 177  Q
    ||||||||||||||||||||| ||| |||| ||| ||| |  ||| |||   |||||||||||| ||||||||||||||||||||||||||| ||| | |    
T  33087373 atgagacaaaattgtgtgtgggaaggtgtagatgctctcatttttatttttgacaaatatgatccattgattaaatccaactgtaatttcttcatgcttc 33087472  T
Q  178 accgatgagagatttaattgatccttcatcctagaat 214  Q
    |||| |||| || || |||||||| ||||||||||||    
T  33087473 accggtgagggacttgattgatccctcatcctagaat 33087509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 35524768 - 35524924
Alignment:
Q  62 agggataggagaagagatgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgt 161  Q
    ||||| ||||||||||  ||||||| ||||||||||||||| || | | ||| | |  ||| |||| ||||||| ||||  ||| | |||||||||||||    
T  35524768 agggagaggagaagaggcgagacaagattgtgtgtggaaaggtgcataagttttcatttttatttctaacaaatctgattcattcaataaatccaactgt 35524867  T
Q  162 aatttctttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    ||||| || ||||||||||| ||||| | ||||||||||| ||| ||||||||||||    
T  35524868 aattttttcatggtccaccggtgagaaacttaattgatccctcaccctagaatccac 35524924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 4095268 - 4095113
Alignment:
Q  62 agggataggagaagagatgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgt 161  Q
    ||||| ||||||||||  ||||||| ||||||||||||||| || | | ||| | |  ||| |||| ||||||| || || ||| | ||||||||||| |    
T  4095268 agggagaggagaagaggcgagacaagattgtgtgtggaaaggtgcataagttttcatttttatttctaacaaatctggtccattcaataaatccaactct 4095169  T
Q  162 aatttctttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    ||||| || ||||||||||| ||||||| ||||||||||| ||| ||||||||||||    
T  4095168 aattttttcatggtccaccggtgagagacttaattgatcc-tcaccctagaatccac 4095113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 33086805 - 33086730
Alignment:
Q  143 attgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    ||||||||||| ||||||||||||||| ||| | ||||| |||  || ||||||||||| ||||||||||||||||    
T  33086805 attgattaaattcaactgtaatttcttcatgcttcaccggtgaaggacttaattgatccctcatcctagaatccac 33086730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 47571846 - 47571982
Alignment:
Q  78 atgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgtaatttctttatggtcc 177  Q
    ||||||||||||||||||||| ||| |||| ||  ||| |  ||| |||  ||||||||||||| ||| ||||||||||||||||||||||| ||| | |    
T  47571846 atgagacaaaattgtgtgtgggaaggtgtagatactctcatttttatttttaacaaatatgatccattaattaaatccaactgtaatttcttcatgtttc 47571945  T
Q  178 accgatgagagatttaattgatccttcatcctagaat 214  Q
    |||| |||| || ||||||||||| ||| ||||||||    
T  47571946 accggtgagggacttaattgatccctcaccctagaat 47571982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 47571272 - 47571197
Alignment:
Q  143 attgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    ||||||||||| ||||||||||||||| ||| | ||||| |||| || ||||||||||| ||| ||||||||||||    
T  47571272 attgattaaattcaactgtaatttcttcatgcttcaccggtgagggacttaattgatccctcaccctagaatccac 47571197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 8475 - 8361
Alignment:
Q  89 ttgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgtaatttctttatggtccaccgatgagag 188  Q
    |||| |||||||| ||||| |||||||||| |||||||| ||||||||||||  ||||| |||||||||| || |||||||| |||||||||  |||| |    
T  8475 ttgtatgtggaaacatgtagatgttcttaattttgtttccaacaaatatgatgcattga-taaatccaaccgt-atttctttgtggtccaccagtgaggg 8378  T
Q  189 atttaattgatccttca 205  Q
    |||||||||| ||||||    
T  8377 atttaattgagccttca 8361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 209
Target Start/End: Complemental strand, 4716270 - 4716123
Alignment:
Q  62 agggataggagaagagatgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgt 161  Q
    ||||| ||||||||||  ||||||| ||||||||||||||| || | | ||| | |  ||| |||| ||||||| || || |||   ||||| |||||||    
T  4716270 agggagaggagaagaggcgagacaagattgtgtgtggaaaggtgcataagttttcatttttatttctaacaaatctggtccattcgataaattcaactgt 4716171  T
Q  162 aatttctttatggtccaccgatgagagatttaattgatccttcatcct 209  Q
    ||||| || ||||||||||| ||||||| ||||||||||| |||||||    
T  4716170 aattttttcatggtccaccggtgagagacttaattgatccctcatcct 4716123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 218
Target Start/End: Original strand, 44987511 - 44987586
Alignment:
Q  143 attgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    ||||||||||| ||||||||||||||| ||| | ||||  ||||||| ||||||||||| ||| ||||||||||||    
T  44987511 attgattaaattcaactgtaatttcttcatgcttcaccagtgagagacttaattgatccctcaccctagaatccac 44987586  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 44986888 - 44986817
Alignment:
Q  143 attgattaaatccaactgtaatttctttatggtccaccgatgagagatttaattgatccttcatcctagaat 214  Q
    ||||||||||| |||||||||||| || ||| | |||||||||| || ||||||||||| ||| ||||||||    
T  44986888 attgattaaattcaactgtaatttattcatgcttcaccgatgagggacttaattgatccctcaccctagaat 44986817  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 41617343 - 41617193
Alignment:
Q  68 aggagaagagatgagacaaaattgtgtgtggaaagatgtaaatgttcttaaatttgtttcaaacaaatatgatctattgattaaatccaactgtaatttc 167  Q
    ||||||||||  ||||||| ||||||||||||||| || | | ||| | |  ||| |||| ||||||| || || ||| | ||||| ||||||||||||     
T  41617343 aggagaagaggcgagacaagattgtgtgtggaaaggtgcataagttttcatttttatttctaacaaatctggtccattcaataaattcaactgtaatttt 41617244  T
Q  168 tttatggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    || ||||||||||| |||| || ||||||||||  |||  |||||||||||    
T  41617243 ttcatggtccaccggtgagggacttaattgatcactcactctagaatccac 41617193  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 36611494 - 36611541
Alignment:
Q  171 atggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    ||||||||||| |||||||||||||||| || ||| ||||||||||||    
T  36611494 atggtccaccggtgagagatttaattgaaccctcaccctagaatccac 36611541  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 3849644 - 3849598
Alignment:
Q  172 tggtccaccgatgagagatttaattgatccttcatcctagaatccac 218  Q
    |||||||||| |||| ||||| |||||||| ||||||||||||||||    
T  3849644 tggtccaccggtgagggatttgattgatccctcatcctagaatccac 3849598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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