View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_high_63 (Length: 344)
Name: NF18974_high_63
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_63 |
 | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 31523227 - 31523519
Alignment:
| Q |
11 |
ttattctgtttccggtaatttatctattttctgatacatttttgcagttgatgtatctgatacattttttcaattgtgttgtannnnnnngttttgaaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
31523227 |
ttattctgtttccggtaatttatctattttctaatacatttttgcagttgatgtatctgatacattttttcaattgtgttgtatttttttgttttggaaa |
31523326 |
T |
|
| Q |
111 |
ctcggtattcagccctagaaggattaatccaaggactaatcagatattgtttcacataatacaagtatgtaaaagaaccctaaagggcctatcacaaatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31523327 |
ctcggtattcagccctagaaggattaatccaaggactaatcagatattgtttcacataatacaagtatgtaaaagaaccctaaagtgcctatcacaaatt |
31523426 |
T |
|
| Q |
211 |
cagaaattttctggaaaatctcaagattgtatagttaaccaacattctagattgttacatcagtgcacattataactagccctcatatcttgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31523427 |
cagaaattttctggaaaatctcaagattgtatagttaaccaacattctagattgttacatcagtgcacattataactagccctcatatcttgt |
31523519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 52126 - 52060
Alignment:
| Q |
201 |
atcacaaattcagaaattttctggaaaatctcaagattgtatagttaaccaacattctagattgtta |
267 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| ||||||| ||| ||||||||| |||||||||| |
|
|
| T |
52126 |
atcacaaattaagaaattttctggaaattctcaatattgtattgtttaccaacattttagattgtta |
52060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 52351 - 52303
Alignment:
| Q |
11 |
ttattctgtttccggtaatttatctattttctgatacatttttgcagtt |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
52351 |
ttattctgtttccggtaatttatctattttcctatacattttttcagtt |
52303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University