View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_high_67 (Length: 336)

Name: NF18974_high_67
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_high_67
NF18974_high_67
[»] chr6 (9 HSPs)
chr6 (125-320)||(2926212-2926407)
chr6 (67-201)||(7047159-7047293)
chr6 (67-200)||(9171155-9171288)
chr6 (67-200)||(7013173-7013306)
chr6 (67-200)||(7026109-7026242)
chr6 (67-189)||(7030166-7030288)
chr6 (4-69)||(7046996-7047061)
chr6 (67-200)||(9159140-9159273)
chr6 (246-302)||(7041992-7042048)
[»] chr8 (1 HSPs)
chr8 (67-200)||(12041980-12042113)
[»] chr3 (1 HSPs)
chr3 (67-105)||(9344192-9344230)
[»] chr7 (1 HSPs)
chr7 (153-201)||(3676237-3676285)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 125 - 320
Target Start/End: Complemental strand, 2926407 - 2926212
Alignment:
Q  125 aagaacgtaaagtggcaacaatgagagggtttttcccatggcacgtgacaacaacaaccttttcagggaacatgtagaaacaattgtgggctatattttc 224  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2926407 aagaacgtaaagtggaaacaatgagagggtttttcccatggcacgtgacaacaacaaccttttcagggaacatgtagaaacaattgtgggctatattttc 2926308  T
Q  225 cttttcgatgtcatagtcccaaatgaaaatgttacttcccaaggggatgacatataatttgttaaaatcgagcacaaggctattacaagaaagagg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  2926307 cttttcgatgtcatagtcccaaatgaaaatgttacttcccaaggggatgacatataatttgttaaaatcaagcacaagactattacaagaaagagg 2926212  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 7047159 - 7047293
Alignment:
Q  67 atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc 166  Q
    ||||| |||||||||||||| || ||||||||  ||||||| |||||||| | || |  |||   ||  ||||||||||||||||||||||| |||||||    
T  7047159 atgtcagggatcaccttccatttttcattgccgcatttcgacagtaacggctctgggtgagaggatattgtggcaacaatgagagggttttttccatggc 7047258  T
Q  167 acgtgacaacaacaaccttttcagggaacatgtag 201  Q
    |||||||| |||  |||||||||||||||||||||    
T  7047259 acgtgacagcaatgaccttttcagggaacatgtag 7047293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 9171155 - 9171288
Alignment:
Q  67 atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatg-aggaagaacgtaaagtggcaacaatgagagggtttttcccatgg 165  Q
    ||||| |||||||||||||||| |||||  ||| ||||| ||||||||||||||| |||||   | |||  || |||||| |||||| ||||| ||||||    
T  9171155 atgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacggatatggaggaaaggc-taacatgccaacaacgagaggtttttttccatgg 9171253  T
Q  166 cacgtgacaacaacaaccttttcagggaacatgta 200  Q
    ||||||||| |||| ||||||| |||| |||||||    
T  9171254 cacgtgacagcaacgacctttttagggtacatgta 9171288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 7013173 - 7013306
Alignment:
Q  67 atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc 166  Q
    ||||| || ||||||||||| |||||||  ||| |||||  |||||| || | || || |||   ||| ||| ||||||||||||| |||||||||||||    
T  7013173 atgtcaggtatcaccttccatttctcatcaccacatttcacaagtaatggctgtgggggagaggttaacgtgccaacaatgagaggttttttcccatggc 7013272  T
Q  167 acgtgacaacaacaaccttttcagggaacatgta 200  Q
    |||| |||||||| ||||||| |||| |||||||    
T  7013273 acgtaacaacaacgacctttttagggtacatgta 7013306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 7026109 - 7026242
Alignment:
Q  67 atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc 166  Q
    ||||| || ||||| ||||| |||||||  ||| |||||  ||||||||| | || || |||   ||| ||| ||||||||||||| |||||||||||||    
T  7026109 atgtcaggtatcacattccatttctcatcaccacatttcataagtaacggctgtgggggagaggttaatgtgccaacaatgagaggttttttcccatggc 7026208  T
Q  167 acgtgacaacaacaaccttttcagggaacatgta 200  Q
    |||| |||||||| ||||||| |||| |||||||    
T  7026209 acgtaacaacaacgacctttttagggtacatgta 7026242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 7030166 - 7030288
Alignment:
Q  67 atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc 166  Q
    |||| ||||||||||||||| |||||||  || |||||| |||||| || ||||| || |||   ||| | | ||||||||||||| ||||| |||||||    
T  7030166 atgttggggatcaccttccagttctcatctccgaatttcaaaagtaccgaatatgggggagaggctaacgcgccaacaatgagaggcttttttccatggc 7030265  T
Q  167 acgtgacaacaacaaccttttca 189  Q
    ||||  || ||||||||||||||    
T  7030266 acgtagcagcaacaaccttttca 7030288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 7046996 - 7047061
Alignment:
Q  4 atccccatctctctccactaataatttcttcttcataccaccaaccaaaggttcaaccattaaatg 69  Q
    ||||||||| |||||||||||||||||||| |||  ||||||| ||||||||||| ||| ||||||    
T  7046996 atccccatcgctctccactaataatttcttgttctcaccaccatccaaaggttcagccactaaatg 7047061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 9159273 - 9159140
Alignment:
Q  67 atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatg-aggaagaacgtaaagtggcaacaatgagagggtttttcccatgg 165  Q
    ||||| |||||||||||||||| |||||  ||| ||||| ||||||||||||| | |||||   | |||  || |||||| ||||||  |||| ||||||    
T  9159273 atgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacggatacggaggaaaggc-taacatgccaacaacgagaggtgtttttccatgg 9159175  T
Q  166 cacgtgacaacaacaaccttttcagggaacatgta 200  Q
    ||||||||| |||| ||||||| |||| |||||||    
T  9159174 cacgtgacagcaacgacctttttagggtacatgta 9159140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 7041992 - 7042048
Alignment:
Q  246 aatgaaaatgttacttcccaaggggatgacatataatttgttaaaatcgagcacaag 302  Q
    ||||||| |||| ||||||||  ||| |||| |||||||||| ||||||||||||||    
T  7041992 aatgaaattgttgcttcccaaatggaggacagataatttgttgaaatcgagcacaag 7042048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 12041980 - 12042113
Alignment:
Q  67 atgtcggggatcaccttccaattctcattgccaaatttcgaaagtaacggatatgaggaagaacgtaaagtggcaacaatgagagggtttttcccatggc 166  Q
    |||||||||||||||||||| |||||||  || |||||| |||||| || ||||| || |||   ||| | | ||||||||||||| ||||| |||||||    
T  12041980 atgtcggggatcaccttccagttctcatctccgaatttcaaaagtaccgaatatgggggagaggctaacgcgccaacaatgagaggcttttttccatggc 12042079  T
Q  167 acgtgacaacaacaaccttttcagggaacatgta 200  Q
    ||||  || ||| |||||||| |||| |||||||    
T  12042080 acgtagcagcaataacctttttagggtacatgta 12042113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 9344192 - 9344230
Alignment:
Q  67 atgtcggggatcaccttccaattctcattgccaaatttc 105  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  9344192 atgtcggggatcaccttccaattctcattgctaaatttc 9344230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 3676237 - 3676285
Alignment:
Q  153 gtttttcccatggcacgtgacaacaacaaccttttcagggaacatgtag 201  Q
    |||||| |||||||| ||||||||||| ||||||| |||| ||||||||    
T  3676237 gttttttccatggcatgtgacaacaacgacctttttagggtacatgtag 3676285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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