View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_high_68 (Length: 336)
Name: NF18974_high_68
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_68 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 45130723 - 45131037
Alignment:
| Q |
15 |
atcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttggtgcaagctaccaatgtacattttggtgcaagacct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45130723 |
atcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttgctgcaagctaccaatgtacattttggtgcaagacct |
45130822 |
T |
|
| Q |
115 |
gatctcaaaagtaagtgaggcggggtaattttatatatattattgagnnnnnnnnnnattgttgtgtgtaaattgggtatcctccatacgcagctgcaga |
214 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45130823 |
gatctcaagagtaagtgaggcggggtaattttatatatattattgagtttttttt--attgttgtgtgtaaattgggtatcctccatacgcagctgcaga |
45130920 |
T |
|
| Q |
215 |
gactaatatcttttaccatgttgattgtatgaacaggacagtgatatataaaatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatgt |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45130921 |
gactaatatcttttaccatgtcgattgtatcaacgggacaatgatatataaaatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatgt |
45131020 |
T |
|
| Q |
315 |
tggagttatggtctgtg |
331 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
45131021 |
tggagttatggtttgtg |
45131037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 45113819 - 45113950
Alignment:
| Q |
15 |
atcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttggtgcaagctaccaatgtacattttggtgcaagacct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
45113819 |
atcaccagggtcatggatttatggttcagaaagagagcttgagagccttcctcatcaatctttagtgcaagctaccaatgtacattttggctcaagacct |
45113918 |
T |
|
| Q |
115 |
gatctcaaaagtaagtgaggcggggtaatttt |
146 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |
|
|
| T |
45113919 |
gatctcaagagtaagtgaggcagggtaatttt |
45113950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 45114071 - 45114129
Alignment:
| Q |
266 |
aatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatgttggagttatg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
45114071 |
aatttgttaattttgcagaaattctgtttgagtgtgaaggcaaagatgttggagttatg |
45114129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 11593380 - 11593427
Alignment:
| Q |
83 |
aagctaccaatgtacattttggtgcaagacctgatctcaaaagtaagt |
130 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||| |||||||||| |
|
|
| T |
11593380 |
aagctaccaatgtgcattatggtgaaagacctgatcttaaaagtaagt |
11593427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University