View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_74 (Length: 315)
Name: NF18974_high_74
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_74 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 13023230 - 13023512
Alignment:
| Q |
14 |
aggcattgagtttctaattgcaattatgttttcaagtggaattcattgtttctcatatttatagggaaagcaatcgttacgatgataaaccaattcattg |
113 |
Q |
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| T |
13023230 |
aggcattgagtttctaattgcaattatgttttcaagtggaattcattgtttcttatatttatagggaaaacaatcgttacgatgataaaccaattctttg |
13023329 |
T |
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| Q |
114 |
tttctcaaagttcattgaaacctcactgacttgagtgtcgaaatatctttgcagatacaccctctatattgtgaaatgatcaactataatcaccgtaaac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||| |||||||||| |
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| T |
13023330 |
cttctcaaagttcattgaaacctcactgacttgagtgtcgaaatatctttacaaatacaccatctatattgtgaaataatcaactataaccaccgtaaac |
13023429 |
T |
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| Q |
214 |
caccacaatggttacttcacaccacctccgacccaatctcctattcgatgacaagaacaaaatccaaggcggatatcacgtgatac |
299 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13023430 |
caccac---ggttacttcacaccacctccgacccaatctcctattcgatgacaagaacaaaatccaaggcgaatatcacgtgatac |
13023512 |
T |
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