View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_78 (Length: 304)
Name: NF18974_high_78
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_78 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 290
Target Start/End: Original strand, 44103808 - 44104094
Alignment:
| Q |
4 |
gccaaaaacaattggagaagcgagttatgcacaatcatcaaacataaaaaatgtaaataacactgcttgtcagattcatcttccttgtatttgtaaaact |
103 |
Q |
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| T |
44103808 |
gccaaaaacaattggagaagcaagttatgcacaatcatcaaacataaaaaatgtaaataacactgcttgtcagattcatcttccttgtatttgtaaaact |
44103907 |
T |
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| Q |
104 |
ctttcaattgattttaattcattggaaaatagaaagcagcgtcaacaacagacaaaaaggaacacattaaacaggatgtaatcagttaacaaactagtat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44103908 |
ctttcaattgattttaattcattggaaaatagaaagcggcgtcaacaacagacaaaaaggaacacattaaacaggatgtaatcagttaacaaactagtat |
44104007 |
T |
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| Q |
204 |
gctggaatttatgtgtctgtaaaaaaggatactaccttagttccataaattatttagttctattaccaagtttactaatgaacattt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44104008 |
gctggaatttatgtgtctgtaaaaaaggatactaccttagttccataaattatttagttctattaccaagtttactaatgaacattt |
44104094 |
T |
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