View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_80 (Length: 299)
Name: NF18974_high_80
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 117 - 292
Target Start/End: Original strand, 56059579 - 56059758
Alignment:
| Q |
117 |
attaatgaaggttttagtaaggacaatatacaattattgtaaa-tatttacggtacctggtattggccatgcatttgaatgatgatta---ttaggtcca |
212 |
Q |
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| T |
56059579 |
attaatgaaggttttagcaaggacaatatacaattattgtaaaatatttacggtacctggtattggccatgcatttgaatgatgattattattaggtcca |
56059678 |
T |
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| Q |
213 |
tcacaatgaagtgagccagtaatgaggacagttgatagcttctcctctccatatccagcaatttccacaacttcttctct |
292 |
Q |
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| T |
56059679 |
tcacaatgaagtgagccagtaatgagtacagttgatagcttctcctctccatatccagcaatttccacaacttcttctct |
56059758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 56059355 - 56059439
Alignment:
| Q |
19 |
ttcagaagtagaaatttcaccaaaatatgaaagcaataaa--------ctgtcaccaaacaatggaacaacaacttcttctgtac |
95 |
Q |
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| T |
56059355 |
ttcagaagtagaaatttcaccaaaatatgaaagcaatataataatatactgtcaccaaacaatggaacaacaacttcttctgtac |
56059439 |
T |
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