View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_high_85 (Length: 290)

Name: NF18974_high_85
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_high_85
NF18974_high_85
[»] chr8 (6 HSPs)
chr8 (132-280)||(37229528-37229676)
chr8 (136-280)||(10529605-10529749)
chr8 (137-277)||(14095271-14095411)
chr8 (16-65)||(10529485-10529534)
chr8 (21-57)||(14095155-14095191)
chr8 (16-51)||(9238590-9238625)
[»] chr4 (9 HSPs)
chr4 (133-280)||(849848-849995)
chr4 (137-280)||(42562406-42562549)
chr4 (132-280)||(39463703-39463852)
chr4 (133-272)||(32309575-32309714)
chr4 (16-65)||(39463595-39463644)
chr4 (16-65)||(850063-850112)
chr4 (16-65)||(32309782-32309831)
chr4 (22-57)||(42562629-42562664)
chr4 (213-276)||(51718924-51718987)
[»] chr1 (10 HSPs)
chr1 (132-280)||(44488755-44488903)
chr1 (132-280)||(50907922-50908070)
chr1 (132-280)||(33298409-33298557)
chr1 (132-280)||(48997352-48997500)
chr1 (133-257)||(28540595-28540719)
chr1 (16-65)||(28540787-28540836)
chr1 (16-65)||(33298624-33298673)
chr1 (23-65)||(48997246-48997288)
chr1 (16-65)||(44488639-44488688)
chr1 (16-65)||(50907805-50907854)
[»] chr6 (5 HSPs)
chr6 (133-280)||(6287534-6287683)
chr6 (133-280)||(35012609-35012761)
chr6 (16-65)||(6287748-6287797)
chr6 (22-54)||(19222888-19222920)
chr6 (22-65)||(35012498-35012541)
[»] chr3 (5 HSPs)
chr3 (132-280)||(34439919-34440067)
chr3 (16-65)||(34440134-34440183)
chr3 (213-276)||(39688021-39688084)
chr3 (16-57)||(39688212-39688253)
chr3 (137-177)||(53347580-53347620)
[»] chr7 (7 HSPs)
chr7 (132-279)||(38455746-38455893)
chr7 (220-275)||(8524471-8524526)
chr7 (16-65)||(38455630-38455679)
chr7 (16-57)||(41799441-41799482)
chr7 (16-55)||(6715705-6715744)
chr7 (16-51)||(12625516-12625551)
chr7 (16-51)||(21065762-21065797)
[»] chr5 (4 HSPs)
chr5 (132-280)||(2741243-2741391)
chr5 (132-280)||(13272397-13272544)
chr5 (16-57)||(2741127-2741168)
chr5 (22-58)||(13272288-13272324)
[»] chr2 (7 HSPs)
chr2 (132-280)||(28033931-28034079)
chr2 (135-280)||(31118724-31118869)
chr2 (213-276)||(940300-940363)
chr2 (16-51)||(37939623-37939658)
chr2 (137-177)||(20932725-20932765)
chr2 (16-51)||(31118953-31118988)
chr2 (137-177)||(18206412-18206452)
[»] scaffold0010 (2 HSPs)
scaffold0010 (135-280)||(33992-34137)
scaffold0010 (16-50)||(34212-34246)
[»] scaffold0408 (2 HSPs)
scaffold0408 (137-277)||(5613-5753)
scaffold0408 (21-57)||(5497-5533)
[»] scaffold1212 (2 HSPs)
scaffold1212 (133-280)||(1002-1154)
scaffold1212 (16-65)||(1222-1271)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 132 - 280
Target Start/End: Complemental strand, 37229676 - 37229528
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||  |||||||||||||||||| ||    
T  37229676 atgttaaatgttgtgcagatatgcctcggaggaatacgtctcagagaccgcctgagccgcctcaggataggagtgacaaacttagggcagggaggcctgc 37229577  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||    
T  37229576 ccctaccggtagtgcacggagggagaaacaagcattacaccatcctatg 37229528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 136 - 280
Target Start/End: Original strand, 10529605 - 10529749
Alignment:
Q  136 taaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggcccct 235  Q
    ||||||||||| | ||||| ||| ||||||||||| | ||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||| ||||||    
T  10529605 taaatgttgtgcatatatgactcagaggaatacgtataagagaccgcctgagccgcctcaggataggagtgacagacttagggcagggaggcctgcccct 10529704  T
Q  236 actggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||    
T  10529705 actggtagtgcacggagggagaaacaagcagtacgccctcctatg 10529749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 14095271 - 14095411
Alignment:
Q  137 aaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggccccta 236  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||| || ||| |||||||||||| ||| ||||||||||||||||||  |||||||    
T  14095271 aaatgttgtgcagatatgcctcggaggaatacgtctttgagaccgcctgagacgcctcaggataggagtgacagacttagggcagggaggcaagccccta 14095370  T
Q  237 ctggtagtgcacggagggagaaacaagcattacaccctcct 277  Q
     |||||||| ||| |||||||  |||||| ||| |||||||    
T  14095371 atggtagtgaacgtagggagatgcaagcactacgccctcct 14095411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 10529485 - 10529534
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  10529485 tgactgcaatgtagtagtttacggattgaaatgacattgttggaatttta 10529534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 14095155 - 14095191
Alignment:
Q  21 acaatgtggtagtttacggattgaaatgacattgttg 57  Q
    |||||||||||||||||||||||||||||||||||||    
T  14095155 acaatgtggtagtttacggattgaaatgacattgttg 14095191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 9238625 - 9238590
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgaca 51  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9238625 tgactgcaatgtggtagtttacggattgaaatgaca 9238590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 133 - 280
Target Start/End: Complemental strand, 849995 - 849848
Alignment:
Q  133 tgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggcc 232  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||| | |||    
T  849995 tgttaaatgttgtgcagatatgcctcggaggaatacgtctcagagaccgcctgagccgcctcaggataggagtgacagacttagggcagggaggtctgcc 849896  T
Q  233 cctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||    
T  849895 cctactactagtgcacggagggagaaacaagcattacaccctcctatg 849848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 137 - 280
Target Start/End: Complemental strand, 42562549 - 42562406
Alignment:
Q  137 aaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggccccta 236  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||| ||| || |||||||||||| ||| ||||||||||||||||||| |||||||    
T  42562549 aaatgttgtgcagatatgcctcggaggaatacgactcagagaccgcctgagctgcctcaggataggagtgacagacttagggcagggaggcctgccccta 42562450  T
Q  237 ctggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  42562449 ctggtagtgtacggagggagaaacaagcattacaccctcctatg 42562406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 39463703 - 39463852
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgactt-agggcagggaggccgg 230  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||| ||| ||||| |||||||||||||| |    
T  39463703 atgttaaatgttgtgcagatatgcctcagaggaatacgtctcagagaccgcctgagccgccttaggataggagtgacagacttaagggcagggaggcctg 39463802  T
Q  231 cccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||||||||||    
T  39463803 cccctaccggtagtgcacgaagggagaaacaagcattacgccctcctatg 39463852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 133 - 272
Target Start/End: Complemental strand, 32309714 - 32309575
Alignment:
Q  133 tgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggcc-ggc 231  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||| | |    
T  32309714 tgttaaatgttgtgcagatatgcctcggaggaatacgactcagagaccgcctgagccgcctcaggataggagtgacagacttagggcagggaggcctgcc 32309615  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacacc 272  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  32309614 ccctact-gtagtgcacggagggagaaactagcattacacc 32309575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 39463595 - 39463644
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  39463595 tgactgcaatgtggtagtttacggattgaaatgacattgttggaatttta 39463644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 850112 - 850063
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  850112 tgactgcaatgtggtagtttatggattgaaatgacattgttggaatttta 850063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 32309831 - 32309782
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  32309831 tgactgcaatgtagtagtttacggattgaaatgacattgttggaatttta 32309782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 42562664 - 42562629
Alignment:
Q  22 caatgtggtagtttacggattgaaatgacattgttg 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  42562664 caatgtggtagtttacggattgaaatgacattgttg 42562629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 51718924 - 51718987
Alignment:
Q  213 ttagggcagggaggccggcccctactggtagtgcacggagggagaaacaagcattacaccctcc 276  Q
    ||||||| |||||||  ||| | ||||||||||||||||||||||| ||||| ||||| |||||    
T  51718924 ttagggctgggaggcgtgcctcgactggtagtgcacggagggagaagcaagcgttacagcctcc 51718987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 44488755 - 44488903
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||| |     
T  44488755 atgttaaatgttgtgcagatatgtctcggaggaatacgtctcagagaccgcctgagccgcctcaggataggagtgacagacttagggcagggaggcccga 44488854  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  44488855 ccctactgatagtgcacggagggagaaacaagcattacgccctcctatg 44488903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 50907922 - 50908070
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||| |||| |||||||||||||| ||    
T  50907922 atgttaaatgttgtgcagatatgcctcggaggaatacgtctcagagatcgcctgagccgcctcaggataggagtgacagactcagggcagggaggcctgc 50908021  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    || |||| |||||||||||||||||||||||||||||||||||||||||    
T  50908022 ccttacttgtagtgcacggagggagaaacaagcattacaccctcctatg 50908070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 132 - 280
Target Start/End: Complemental strand, 33298557 - 33298409
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||| ||| ||||| || ||| ||||||||||||||||||| ||    
T  33298557 atgttaaatgttgtgcatatatgcctcagaggaatacgtctcagagaccgcctgagccgcctcatgatagaagtgacagacttagggcagggaggcctgc 33298458  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33298457 ccctactggtagtgcacggagggagaaacaagcattacgccctcctatg 33298409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 48997352 - 48997500
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||||||||| | ||||||||| |||||| ||||||||||||||| || |||||| |||||||||||| ||| ||| ||||| ||||||||| ||    
T  48997352 atgttaaatgttgtgcaaatatgcctcagaggaaaacgtctcagagaccgtctgagccgcctcaggataggagtgacagacatagggtagggaggcctgc 48997451  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  48997452 ccctactggtagtgcacggagggagaaacaagcattacgccctcatatg 48997500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 28540719 - 28540595
Alignment:
Q  133 tgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggcc 232  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||  | |    
T  28540719 tgttaaatgttgtgcagatatgcctcggaggaatacgtctcagagaccgcctgagccgcctcaggataggagtgacagacttagggcagggaggcaaggc 28540620  T
Q  233 cctactggtagtgcacggagggaga 257  Q
    |||||| |||||||||| |||||||    
T  28540619 cctactagtagtgcacgtagggaga 28540595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 28540836 - 28540787
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  28540836 tgactgcaatgtggtagtttacggattgaaatgacattgttggaatttta 28540787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 33298673 - 33298624
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33298673 tgactgcaatgtggtagtttacggattgaaatgacattgttggaatttta 33298624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 48997246 - 48997288
Alignment:
Q  23 aatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  48997246 aatgtggtagtttacggattgaaatgacattgttggaatttta 48997288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 44488639 - 44488688
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| ||||||    
T  44488639 tgactgcaatgtggtagtttacggattgaaacgacattgttggaatttta 44488688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 50907805 - 50907854
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  50907805 tgactgcaatgtggtagtttacggtttgaaatgacattgttggaatttta 50907854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 133 - 280
Target Start/End: Complemental strand, 6287683 - 6287534
Alignment:
Q  133 tgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggata--ggagcgaccgacttagggcagggaggccgg 230  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||  |||| |||  |||||||||||||||||  |    
T  6287683 tgttaaatgttgtgcagatatgcctcggaggaatacgtctcagagaccgcctgagccgcctcaggatataggagtgacaaacttagggcagggaggcttg 6287584  T
Q  231 cccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6287583 cccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 6287534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 280
Target Start/End: Original strand, 35012609 - 35012761
Alignment:
Q  133 tgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggatag------gagcgaccgacttagggcagggagg 226  Q
    ||||||||||| || ||||||||||| |||||||||||||||||||| |||| ||| || ||| |||||      ||| ||| ||||||||||| |||||    
T  35012609 tgttaaatgttttgcagatatgcctcagaggaatacgtctcagagactgcctgagcggcctcatgataggaatgagagtgacagacttagggcatggagg 35012708  T
Q  227 ccggcccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    || | ||||||| ||||| || ||||||| ||||||||||| ||||||||||||    
T  35012709 cctg-ccctactagtagtacatggagggaaaaacaagcattgcaccctcctatg 35012761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 6287797 - 6287748
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    |||||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  6287797 tgactacaatgtggtagtttacagattgaaatgagattgttggaatttta 6287748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 19222888 - 19222920
Alignment:
Q  22 caatgtggtagtttacggattgaaatgacattg 54  Q
    |||||||||||||||||||||||||||||||||    
T  19222888 caatgtggtagtttacggattgaaatgacattg 19222920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 35012498 - 35012541
Alignment:
Q  22 caatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||    
T  35012498 caatgcggtagtttactgattgaaatgacattgttggaatttta 35012541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 132 - 280
Target Start/End: Complemental strand, 34440067 - 34439919
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||  |||||||||||| ||| ||||||||||||||||||| ||    
T  34440067 atgttaaattttgtgtatatatgcctcggaggaatacgtcttagagaccgcctgagccgtctcaggataggagtgacagacttagggcagggaggcctgc 34439968  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  34439967 ccctactggtactgcacggagggagaaacaagcattacgccctcctatg 34439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 34440183 - 34440134
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  34440183 tgactgcaatgtggtagtttacggattgaaatgacattgttggaatttta 34440134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 39688084 - 39688021
Alignment:
Q  213 ttagggcagggaggccggcccctactggtagtgcacggagggagaaacaagcattacaccctcc 276  Q
    ||||||| |||||||  ||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  39688084 ttagggctgggaggcgtgcccctactggtagtgcacggagggggaagcaagcactacaccctcc 39688021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 39688253 - 39688212
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttg 57  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||    
T  39688253 tgactgcaatgtggtagtttatggattcaaatgacattgttg 39688212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 53347620 - 53347580
Alignment:
Q  137 aaatgttgtgtagatatgcctcggaggaatacgtctcagag 177  Q
    |||||||||| ||||||| |||||||||||| |||||||||    
T  53347620 aaatgttgtgcagatatgtctcggaggaatatgtctcagag 53347580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 132 - 279
Target Start/End: Original strand, 38455746 - 38455893
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||||||||| | |||||||||||||||||| |||||| ||||||||| |||||| |||||||||||| ||| | ||||||||||||||||| ||    
T  38455746 atgttaaatgttgtgcaaatatgcctcggaggaatatgtctcaaagaccgcctgagccgcctcaggataggagtgacaggcttagggcagggaggcctgc 38455845  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctat 279  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  38455846 ccctactggtagtgcacggagggagaaacaagcattacgccctcctat 38455893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 8524526 - 8524471
Alignment:
Q  220 agggaggccggcccctactggtagtgcacggagggagaaacaagcattacaccctc 275  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||    
T  8524526 agggaggcctgcccctactggtagtgcatggagggagaagcaagcattacaacctc 8524471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 38455630 - 38455679
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    |||||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  38455630 tgactacaatgtggtagtttacagattgaaataacattgttggaatttta 38455679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 41799482 - 41799441
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttg 57  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  41799482 tgactacaatgtggtagtttatggattcaaatgacattgttg 41799441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 6715744 - 6715705
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgt 55  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  6715744 tgactgcaatgtgatagtttacggattgaaatgacattgt 6715705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 12625516 - 12625551
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgaca 51  Q
    ||||| ||||||||||||||||||||||||||||||    
T  12625516 tgactgcaatgtggtagtttacggattgaaatgaca 12625551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 21065797 - 21065762
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgaca 51  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21065797 tgactacaatgtggtagtttatggattgaaatgaca 21065762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 2741243 - 2741391
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||||||||| | |||||||||  |||||||||||||||||||||||| |||| | |||||||||||| ||| ||||||||||||||||||| ||    
T  2741243 atgttaaatgttgtgcaaatatgcctcaaaggaatacgtctcagagaccgcctgagccacctcaggataggagtgacagacttagggcagggaggcctgc 2741342  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||    
T  2741343 ccctactggtagtgcacggagggagaaacaagcattacgtcctcctatg 2741391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 13272397 - 13272544
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||  || ||||||||||||||||||  ||    
T  13272397 atgttaaatgttgtgcagatatgcctcggaggaatacgtctcaga-accacctgagccgcctcaggataggagttacagacttagggcagggaggcttgc 13272495  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13272496 ccctactggtagtgcacggagggagaaacaagcaatacgccctcctatg 13272544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 2741127 - 2741168
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttg 57  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  2741127 tgactccaatgtggtagtttacggattgaaatgacattgttg 2741168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 13272288 - 13272324
Alignment:
Q  22 caatgtggtagtttacggattgaaatgacattgttgg 58  Q
    |||||||||||||||||||||||||||| ||||||||    
T  13272288 caatgtggtagtttacggattgaaatgatattgttgg 13272324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 132 - 280
Target Start/End: Original strand, 28033931 - 28034079
Alignment:
Q  132 atgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggc 231  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||| |||||||||||| ||| ||||||||||||| |||||  |    
T  28033931 atgttaaatgttgtgtagatatgcctcagaggaatatgtctcagagacctcctgagccgcctcaggataggagtgacagacttagggcaggcaggccttc 28034030  T
Q  232 ccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  28034031 ccctactggtagtgcacggagggagaaacaatcattacgccctcctatg 28034079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 280
Target Start/End: Complemental strand, 31118869 - 31118724
Alignment:
Q  135 ttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggcccc 234  Q
    |||| ||||||| ||||||| |||| |  ||||||||||| || |||||| |||||| |||||||||||| |||  | |||||||||||||||| |||||    
T  31118869 ttaagtgttgtgcagatatgtctcgaaaaaatacgtctcaaaggccgcctgagccgcctcaggataggagtgacaaaattagggcagggaggcctgcccc 31118770  T
Q  235 tactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    |||||||||||||| ||||||||| |||||| ||| ||||||||||    
T  31118769 tactggtagtgcacagagggagaagcaagcactacgccctcctatg 31118724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 940300 - 940363
Alignment:
Q  213 ttagggcagggaggccggcccctactggtagtgcacggagggagaaacaagcattacaccctcc 276  Q
    ||||||| |||||||  |||||||| |||||||||||||||||||| |||||| ||||||||||    
T  940300 ttagggctgggaggcgtgcccctaccggtagtgcacggagggagaagcaagcactacaccctcc 940363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 37939658 - 37939623
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgaca 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  37939658 tgactacaatgtggtagtttacggattgaaatgaca 37939623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 20932725 - 20932765
Alignment:
Q  137 aaatgttgtgtagatatgcctcggaggaatacgtctcagag 177  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  20932725 aaatgttgtgtagatatgtctcggaggaatatgtctcagag 20932765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 31118988 - 31118953
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgaca 51  Q
    |||||||||||||||| |||||||||||||||||||    
T  31118988 tgactacaatgtggtactttacggattgaaatgaca 31118953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 18206452 - 18206412
Alignment:
Q  137 aaatgttgtgtagatatgcctcggaggaatacgtctcagag 177  Q
    |||| ||||| ||||||| ||||||||||||||||||||||    
T  18206452 aaattttgtgcagatatgtctcggaggaatacgtctcagag 18206412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 135 - 280
Target Start/End: Complemental strand, 34137 - 33992
Alignment:
Q  135 ttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggcccc 234  Q
    ||||||||| || ||||||||||||||||||||||||||||||||| ||| |||||| | |||||||||| ||| ||||||||| ||||||||| |||||    
T  34137 ttaaatgttatgcagatatgcctcggaggaatacgtctcagagaccacctgagccgcctaaggataggagtgacagacttagggaagggaggcctgcccc 34038  T
Q  235 tactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
    ||||||||||| || |||||||||||||||||||| ||||||||||    
T  34037 tactggtagtgtacagagggagaaacaagcattacgccctcctatg 33992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 34246 - 34212
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgac 50  Q
    |||||||||||||||||||||||||||||||||||    
T  34246 tgactacaatgtggtagtttacggattgaaatgac 34212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 5613 - 5753
Alignment:
Q  137 aaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagccgcttcaggataggagcgaccgacttagggcagggaggccggccccta 236  Q
    |||||||||| |||||||||||||||||||||||||  |||||||||| || ||| |||||||||||| ||| ||||||||||||||||||  |||||||    
T  5613 aaatgttgtgcagatatgcctcggaggaatacgtctttgagaccgcctgagacgcctcaggataggagtgacagacttagggcagggaggcaagccccta 5712  T
Q  237 ctggtagtgcacggagggagaaacaagcattacaccctcct 277  Q
     |||||||| ||| |||||||  |||||| ||| |||||||    
T  5713 atggtagtgaacgtagggagatgcaagcactacgccctcct 5753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 5497 - 5533
Alignment:
Q  21 acaatgtggtagtttacggattgaaatgacattgttg 57  Q
    |||||||||||||||||||||||||||||||||||||    
T  5497 acaatgtggtagtttacggattgaaatgacattgttg 5533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 133 - 280
Target Start/End: Complemental strand, 1154 - 1002
Alignment:
Q  133 tgttaaatgttgtgtagatatgcctcggaggaatacgtctcagagaccgcctaagcc------gcttcaggataggagcgaccgacttagggcagggagg 226  Q
    ||||||||| | || |||||||||| |||||||||||||||||||||||||| ||||      || |||||||||||| ||| |||||||||||||||||    
T  1154 tgttaaatgatttgcagatatgccttggaggaatacgtctcagagaccgcctgagcctgagccgcctcaggataggagtgacagacttagggcagggagg 1055  T
Q  227 ccggcccctactggtagtgcacggagggagaaacaagcattacaccctcctatg 280  Q
     ||||| | |||| |||||||| ||||||||||||||||| |||||||||||||    
T  1054 tcggcctcgactgatagtgcac-gagggagaaacaagcatgacaccctcctatg 1002  T

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Target: scaffold1212; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 1271 - 1222
Alignment:
Q  16 tgactacaatgtggtagtttacggattgaaatgacattgttgggatttta 65  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  1271 tgactgcaaagtggtagtttacggattgaaatgacattgttgggatttta 1222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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