View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_86 (Length: 288)
Name: NF18974_high_86
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_86 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 35273268 - 35273536
Alignment:
| Q |
1 |
tcacgaacctcaggagcctgaggttcgtgaaaacgaacatggtggtgataggcttgttttctctggcaagactctcacccagtcggatgctaataatggc |
100 |
Q |
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| T |
35273268 |
tcacgaacctcaggagcctgaggttcgtgaaaatgaacatggtggtgataggcttgttttctctggcaagactctcacccagtcggatgctaataatggc |
35273367 |
T |
|
| Q |
101 |
ggtgcattctccgtcccttctgaatgcgaaaaattgatattcccgccacttgacctaacatccccaatgccgtctcaggtacttccgatcaaggacatcc |
200 |
Q |
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| T |
35273368 |
ggtgcattctccgtaccttctgaatgcgcgaaattgatattcccgccacttgacctaacatccccaatgccgtctcaggtacttccgatcaaggacatcc |
35273467 |
T |
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| Q |
201 |
acaattttgtttggaactttcgccacacctaccgtgggtctcccaagcgacacctaatcaccactaaat |
269 |
Q |
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| T |
35273468 |
acaattttgtttggaactttcgccacacctaccgtgggtctcccaagcgacacctaatcaccactaaat |
35273536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 17914332 - 17914471
Alignment:
| Q |
17 |
cctgaggttcgtgaaaacgaacatggtggtgataggcttgttttctctggcaagactctcacccagtcggatgctaataatggcggtgcattctccgtcc |
116 |
Q |
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| T |
17914332 |
cctgaggttcgtgaagaccaacatgacggggttaaggttgtttcctctggcaaaactctaactccgtctgatgctaataacggcggtgcattctcagtgc |
17914431 |
T |
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| Q |
117 |
cttctgaatgcgaaaaattgatattcccgccacttgacct |
156 |
Q |
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| T |
17914432 |
ctagcgaatgcgcaaaattaatcttcccgccacttgacct |
17914471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 17976777 - 17976688
Alignment:
| Q |
67 |
caagactctcacccagtcggatgctaataatggcggtgcattctccgtcccttctgaatgcgaaaaattgatattcccgccacttgacct |
156 |
Q |
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| T |
17976777 |
caagactctcaccccatctgatgctaacaatggcggtgcattctctgtgccagtggaatgcgcgaaattaatcttcccgccacttgacct |
17976688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 8823324 - 8823384
Alignment:
| Q |
54 |
ttgttttctctggcaagactctcacccagtcggatgctaataatggcggtgcattctccgt |
114 |
Q |
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| T |
8823324 |
ttgtttcctctggaaagactctaaccctatctgatgctaataacggtggtgcattctccgt |
8823384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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