View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_88 (Length: 285)
Name: NF18974_high_88
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_88 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 4117015 - 4116866
Alignment:
| Q |
1 |
ttagtgtcgtttgtaactaggcaagatttgctttgagtaatcaccattaacattgttctaaaagtggcatctttcttattcaatctatatgtgccatttt |
100 |
Q |
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| T |
4117015 |
ttagtgtcgtttgtaactaggcaagatttgctttgagtaatcaccgttaacattattctaaaagtggcatctttcttattcaatctatatgtgccatttt |
4116916 |
T |
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| Q |
101 |
gatattaatttagctgttcatatatatttgttttgcatttgtgctcttgc |
150 |
Q |
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| T |
4116915 |
gatattagtttagctgttcgtatatatttgttttgcatttgtgctcttgc |
4116866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 21156303 - 21156172
Alignment:
| Q |
1 |
ttagtgtcgtttgtaactaggcaagatttgctttgagtaatcaccattaacattgttctaaaagtggcatctttcttattcaatctatatgtgccatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21156303 |
ttagtgtcgtttgtaactaggcaagatttgctttgagtaatcaccattaacattgttctaaaagtggcatctttcttattcaatctatatgtgccacttt |
21156204 |
T |
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| Q |
101 |
gatattaatttagctgttcatatatatttgtt |
132 |
Q |
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| T |
21156203 |
gatattagtttagctgttcatatatatttgtt |
21156172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 21155910 - 21155841
Alignment:
| Q |
202 |
gttaatgaattggaaattattcacatgtgtacagtatattatctctgggtaactatttattttgttcatg |
271 |
Q |
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| T |
21155910 |
gttaatgaattggaaattattcacatgtgtacaatatattatctctgggtaactatttattttgttcatg |
21155841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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