View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_high_92 (Length: 256)

Name: NF18974_high_92
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_high_92
NF18974_high_92
[»] chr8 (3 HSPs)
chr8 (1-237)||(9334016-9334266)
chr8 (4-53)||(20284824-20284873)
chr8 (4-53)||(21071453-21071502)
[»] chr2 (2 HSPs)
chr2 (20-66)||(44050019-44050065)
chr2 (22-70)||(19316531-19316579)
[»] chr1 (2 HSPs)
chr1 (12-53)||(13361494-13361535)
chr1 (4-53)||(45190683-45190732)
[»] chr5 (2 HSPs)
chr5 (4-70)||(22203824-22203890)
chr5 (24-53)||(21012585-21012614)
[»] chr4 (1 HSPs)
chr4 (4-70)||(34259943-34260009)
[»] chr3 (1 HSPs)
chr3 (4-70)||(47683907-47683973)


Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 9334266 - 9334016
Alignment:
Q  1 aactaagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcattactca--------------gcaaaataggggttt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||              |||||||||||||||    
T  9334266 aactaagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaagtatcattactcaactcattttatctagcaaaataggggttt 9334167  T
Q  87 taccatagaaaatgacaccagccgcatgattctaaacatatatttgtctaactcgaatctattgtttattatgttggtgtataattgtaagtcattgtat 186  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  9334166 taccatagaagatgacaccagccacatgattgtaaacatatatttgtctaactcgaatctattgtttattatgttgttgtataattgtaagtcactgtat 9334067  T
Q  187 aggggtgaagccatcttaatatccattccaccatttcttagaagtgagcaa 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334066 aggggtgaagccatcttaatatccattccaccatttcttagaagtgagcaa 9334016  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 20284824 - 20284873
Alignment:
Q  4 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttg 53  Q
    ||||||| ||||||| |||||||||||||||| ||||||| |||||||||    
T  20284824 taagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttg 20284873  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 21071453 - 21071502
Alignment:
Q  4 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttg 53  Q
    ||||||| ||||||| |||||||||||||||| ||||||| |||||||||    
T  21071453 taagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttg 21071502  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 44050065 - 44050019
Alignment:
Q  20 gaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcatt 66  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||||    
T  44050065 gaaggttgtcacaaaagttgtcataaaatggttgtacaagtatcatt 44050019  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 19316579 - 19316531
Alignment:
Q  22 aggttgtcacaaaaattgtcataaaatggttgcacaggtatcattactc 70  Q
    |||||||||||||| |||||||||||| |||| |||| | |||||||||    
T  19316579 aggttgtcacaaaagttgtcataaaatagttgtacagttgtcattactc 19316531  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 13361535 - 13361494
Alignment:
Q  12 gagaaaatgaaggttgtcacaaaaattgtcataaaatggttg 53  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  13361535 gagaaaaagaaggttgtcacaaaaattgtcataaaattgttg 13361494  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 45190683 - 45190732
Alignment:
Q  4 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttg 53  Q
    ||||||| ||||||| ||||||||| |||||||||||||| |||| ||||    
T  45190683 taagaagagagaaaaagaaggttgttacaaaaattgtcattaaatagttg 45190732  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 22203824 - 22203890
Alignment:
Q  4 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcattactc 70  Q
    ||||||| ||||||| |||||||||||||||||||  ||| ||||||||| |||  ||| |||||||    
T  22203824 taagaagagagaaaaggaaggttgtcacaaaaattaccatcaaatggttgtacaaatattattactc 22203890  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 21012614 - 21012585
Alignment:
Q  24 gttgtcacaaaaattgtcataaaatggttg 53  Q
    ||||||||||||||||||||||||||||||    
T  21012614 gttgtcacaaaaattgtcataaaatggttg 21012585  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 34259943 - 34260009
Alignment:
Q  4 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcattactc 70  Q
    ||||||| ||||||| |||| ||||||||||| ||||||  ||||||||| |||  |||||||||||    
T  34259943 taagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcattactc 34260009  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 47683907 - 47683973
Alignment:
Q  4 taagaagtgagaaaatgaaggttgtcacaaaaattgtcataaaatggttgcacaggtatcattactc 70  Q
    ||||||| ||||||  |||||||||| ||||| |||||| |||||||||| |||  |||||||||||    
T  47683907 taagaagagagaaagagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcattactc 47683973  T

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