View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_high_95 (Length: 254)
Name: NF18974_high_95
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_95 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 16425329 - 16425546
Alignment:
| Q |
16 |
acaaactaattcaaaaaatatacctcgattctaaagaaaagtcaactgtttttaaaaggatttttcaacaataaggcatgagggaaggnnnnnnnnncac |
115 |
Q |
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| T |
16425329 |
acaaactaattcaaaaaatatacctcgattctaaagaaaagtcaactgtttttaaaaggatttttcaacaataaggcatgaggaaa-----aaaaaacat |
16425423 |
T |
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| Q |
116 |
caattcaactatcaaaactaccatcaaaatatagcttttttgagaggatcaacaaatacttatgaaaaggaagaaaactattaaaaataaatagtaatgt |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16425424 |
caattcaactatcaaaactaccatcaacatatagcttttttgagaggatcaacaaatacttatgaaaaggaagaaaactattaaaaataaatagtaatgt |
16425523 |
T |
|
| Q |
216 |
actctctagatgtgcttttttat |
238 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
16425524 |
actctctagatgtgcttttttat |
16425546 |
T |
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