View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18974_high_97 (Length: 253)

Name: NF18974_high_97
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18974_high_97
NF18974_high_97
[»] scaffold0373 (1 HSPs)
scaffold0373 (37-237)||(14002-14203)
[»] chr4 (4 HSPs)
chr4 (37-237)||(6826070-6826271)
chr4 (117-219)||(12098252-12098354)
chr4 (117-175)||(46692796-46692855)
chr4 (117-175)||(35417447-35417505)
[»] chr6 (2 HSPs)
chr6 (117-234)||(2298342-2298460)
chr6 (117-181)||(31131332-31131396)
[»] chr2 (1 HSPs)
chr2 (117-175)||(32522431-32522490)
[»] chr3 (1 HSPs)
chr3 (1-35)||(7627329-7627363)
[»] chr7 (1 HSPs)
chr7 (1-34)||(22518041-22518074)
[»] scaffold0458 (1 HSPs)
scaffold0458 (117-185)||(10204-10272)
[»] chr1 (1 HSPs)
chr1 (117-185)||(39453402-39453470)


Alignment Details
Target: scaffold0373 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 37 - 237
Target Start/End: Original strand, 14002 - 14203
Alignment:
Q  37 actgccaaaatttaagtgttgttgaatgagtaggaattgacacaatgtccgttgataagtgttcaaaagtgatatttaagtgttttgcaaattatctaag 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14002 actgccaaaatttaagcgttgttgaatgagtaggaattgacacaatatccgttgataagtgttcaaaagtgatatttaagtgttttgcaaattatctaag 14101  T
Q  137 gaaaagctataatttaatgtaattataccaattatgcttcatgtgccttgctccatccatttgtgcaggaaaataaaagcaa-gatcaagaaatcatcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||    
T  14102 gaaaagctataatttaatgtaattataccaattatgcttcatgtgccttgctctacccatttgtgcaggaaaataaaagcaaggaccaagaaatcatcat 14201  T
Q  236 tc 237  Q
    ||    
T  14202 tc 14203  T

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Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 37 - 237
Target Start/End: Complemental strand, 6826271 - 6826070
Alignment:
Q  37 actgccaaaatttaagtgttgttgaatgagtaggaattgacacaatgtccgttgataagtgttcaaaagtgatatttaagtgttttgcaaattatctaag 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6826271 actgccaaaatttaagcgttgttgaatgagtaggaattgacacaatatccgttgataagtgttcaaaagtgatatttaagtgttttgcaaattatctaag 6826172  T
Q  137 gaaaagctataatttaatgtaattataccaattatgcttcatgtgccttgctccatccatttgtgcaggaaaataaaagcaa-gatcaagaaatcatcat 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||    
T  6826171 gaaaagctataatttaatgtaattataccaattatgcttcatgtgccttgctctacccatttgtgcaggaaaataaaagcaaggaccaagaaatcatcat 6826072  T
Q  236 tc 237  Q
    ||    
T  6826071 tc 6826070  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 219
Target Start/End: Complemental strand, 12098354 - 12098252
Alignment:
Q  117 tgttttgcaaattatctaaggaaaagctataatttaatgtaattataccaattatgcttcatgtgccttgctccatccatttgtgcaggaaaataaaagc 216  Q
    ||||||||||  |||| | |||||||||| ||||| ||| |   || |||||||||||| ||||||||| ||| | ||| ||||||||||||||| ||||    
T  12098354 tgttttgcaagatatccatggaaaagctacaatttgatgaataaatcccaattatgctttatgtgccttactctacccaattgtgcaggaaaatacaagc 12098255  T
Q  217 aag 219  Q
    |||    
T  12098254 aag 12098252  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 46692855 - 46692796
Alignment:
Q  117 tgttttgcaaattatctaaggaaaagctataattt-aatgtaattataccaattatgctt 175  Q
    |||||||||| ||||||||||||||||||| |||| | |||| |||||||| ||||||||    
T  46692855 tgttttgcaagttatctaaggaaaagctatcatttgagtgtatttataccatttatgctt 46692796  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 35417505 - 35417447
Alignment:
Q  117 tgttttgcaaattatctaaggaaaagctataatttaatgtaattataccaattatgctt 175  Q
    ||||||||||||||||||||||||||| || ||||  |||||||  |||| ||||||||    
T  35417505 tgttttgcaaattatctaaggaaaagcaatcatttgttgtaatttgaccatttatgctt 35417447  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 2298342 - 2298460
Alignment:
Q  117 tgttttgcaaattatctaaggaaaagctataatttaatgtaattataccaattatgcttcatgtgccttgctccatccatttgtgcaggaaaataaaagc 216  Q
    |||||||||| |||||||||||||| ||| ||||| ||||||||||  ||||||||||| ||||||||| ||  | | ||||||||||||||||| || |    
T  2298342 tgttttgcaagttatctaaggaaaaactacaatttgatgtaattatgtcaattatgctttatgtgccttactatacctatttgtgcaggaaaatacaaac 2298441  T
Q  217 aa-gatcaagaaatcatca 234  Q
    || || |||||||||||||    
T  2298442 aaggaccaagaaatcatca 2298460  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 31131332 - 31131396
Alignment:
Q  117 tgttttgcaaattatctaaggaaaagctataatttaatgtaattataccaattatgcttcatgtg 181  Q
    |||||||||| |||||||||||||| |||| | ||  |||| |||||||| |||||||| |||||    
T  31131332 tgttttgcaagttatctaaggaaaatctatcaattgttgtatttataccatttatgctttatgtg 31131396  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 32522431 - 32522490
Alignment:
Q  117 tgttttgcaaattatctaaggaaaagctataattt-aatgtaattataccaattatgctt 175  Q
    |||||||||| ||||||||||||||||||| |||| | |||| |||||||| ||||||||    
T  32522431 tgttttgcaagttatctaaggaaaagctatcatttgagtgtatttataccatttatgctt 32522490  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 7627329 - 7627363
Alignment:
Q  1 aaattggtttgttattgttgattgtagttagtttt 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  7627329 aaattggtttgttattgttgattatagttagtttt 7627363  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22518074 - 22518041
Alignment:
Q  1 aaattggtttgttattgttgattgtagttagttt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  22518074 aaattggtttgttattgttgattatagttagttt 22518041  T

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Target: scaffold0458 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 10272 - 10204
Alignment:
Q  117 tgttttgcaaattatctaaggaaaagctataatttaatgtaattataccaattatgcttcatgtgcctt 185  Q
    |||||||||| |||||||||||||| |||  ||||  ||||||| | ||| |||||||| |||||||||    
T  10272 tgttttgcaagttatctaaggaaaaactaccatttgttgtaattttgccatttatgctttatgtgcctt 10204  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 39453402 - 39453470
Alignment:
Q  117 tgttttgcaaattatctaaggaaaagctataatttaatgtaattataccaattatgcttcatgtgcctt 185  Q
    |||||||||| |||||||||||||| |||  ||||  ||||||| | ||| |||||||| |||||||||    
T  39453402 tgttttgcaagttatctaaggaaaaactaccatttgttgtaattttgccatttatgctttatgtgcctt 39453470  T

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