View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_high_98 (Length: 252)
Name: NF18974_high_98
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_high_98 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9629606 - 9629844
Alignment:
| Q |
1 |
tgcatacatttccaattcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9629606 |
tgcatacatttccaattcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaaagtg |
9629705 |
T |
|
| Q |
101 |
gaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgttcatggagaggtatcacttgtgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9629706 |
gaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgtttatggagaggtatcacttgtgat |
9629805 |
T |
|
| Q |
201 |
gattctaaaggaagtgttacaatcataaacttggcatat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9629806 |
gattctaaaggaagtgttacaatcataaacttggcatat |
9629844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13607640 - 13607404
Alignment:
| Q |
1 |
tgcatacatttccaattcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13607640 |
tgcatacatttccaattcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaaagtg |
13607541 |
T |
|
| Q |
101 |
gaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgttcatggagaggtatcacttgtgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13607540 |
gaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgtttatggagaggtatcacttgtgat |
13607441 |
T |
|
| Q |
201 |
gattctaaaggaagtgttacaatcataaacttggcat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13607440 |
gattctaaaggaagtgttacaatcataaacttggcat |
13607404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 13902365 - 13902601
Alignment:
| Q |
1 |
tgcatacatttccaattcaagctactttgttggtttctttgttgctagctctatgccaaatcacttcaggactgacacaatttgaagccttgttaaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13902365 |
tgcatacatttccaattcaagctactgtattggtttctttgttgctagctctatgccaaatcacttcagggctgacacaatttgaagccttgttaaagtg |
13902464 |
T |
|
| Q |
101 |
gaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgttcatggagaggtatcacttgtgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13902465 |
gaaacaaagtctccctcaacaaccaattcttgattcatggatcattaacaactctagttcaacacaaacaccatgtttatggagaggtatcacttgtgat |
13902564 |
T |
|
| Q |
201 |
gattctaaaggaagtgttacaatcataaacttggcat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13902565 |
gattctaaaggaagtgttacaatcataaacttggcat |
13902601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University