View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_10 (Length: 601)
Name: NF18974_low_10
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 591
Target Start/End: Original strand, 53602973 - 53603531
Alignment:
| Q |
18 |
atttattatctaggactaattagtttatttgcttgttttgcactgtaaattggaataagtattgaagcaacaatatttacttttctgtcaaatgagatat |
117 |
Q |
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| T |
53602973 |
atttattatctaggactaa---gtttatttgcttgttttgcactgtaaattggaataagtattgaagcaacaatatttacttttctatcaaatgagatat |
53603069 |
T |
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| Q |
118 |
ataaccaaatttttatttctattaaaaaacttaatattattacaaagaccattacagtgccatctaccttgttgctatgaaataaattttgattaattat |
217 |
Q |
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| T |
53603070 |
ataaccaaatttttatttctattaaaaaacttaatattatta------------cagtgccatctaccttgttgctatgaaataaattttgattaattat |
53603157 |
T |
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| Q |
218 |
gtaactaaatatatttgtgtgattaataactggttttttaattacatgtgatataattgttatccatccatattctaatttgcagcaagattatcactca |
317 |
Q |
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| T |
53603158 |
gtaactaaatatatttgtatgattaataactggtttttcaattacatgtgatataattgttatccatccatattctaatttgcagcaagattatcactca |
53603257 |
T |
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| Q |
318 |
agcgtcaattgttgcgttcttcagcaaccttgcagatgttggccttcatggttcaatgatggtattttatgattttcaagttttatcatgtattttttaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53603258 |
agcgtcaattgttgcgttcttcagcaaccttgcagatgttggccttcatggttcaatgatggtatgttatgattttcaagttttatcatgtattttttaa |
53603357 |
T |
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| Q |
418 |
ccttaacttagtttgtgatgccactctattttttgtgtgcagtattacttaaaggctcggtttcattttgataagaatcactttgctgacttaatgatca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53603358 |
ccttaacttagtttgtgatgccactctattttttgtgtgcagtattacttaaaggctcggtttcattttgataagaatcactttgctgacttaatgatca |
53603457 |
T |
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| Q |
518 |
tttctggtattgcagggactgtgtcacaggtaatttttgtaagaagtgattttagttgtcaaatatcacctatg |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53603458 |
tttctggtattgcagggactgtgtcacaggtaatttttgtaagacgtgattttagttgtcaaatatcacctatg |
53603531 |
T |
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