View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_104 (Length: 251)
Name: NF18974_low_104
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_104 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 13024061 - 13024299
Alignment:
| Q |
1 |
ttaccatgttattcaaacatgttaaatactccaagactttgtatgcagtttcctttgtaagagcgtgcttaaattgaatattgattgaaatgcaggcagg |
100 |
Q |
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| T |
13024061 |
ttaccatgttattcaaacatgttaaatattccaagactttgtatgcagtttcttttgtaagagcgtgcttaaattgaatattgattgaaatgcaggcagg |
13024160 |
T |
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| Q |
101 |
tcctcggatatgcctaggaaaggagtttgcttatagacagatgaagatattctcagcagttttattaggttgttttcgtttcaaattgaatgatgagaag |
200 |
Q |
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| T |
13024161 |
tcctcggatatgcctaggaaaggagtttgcttatagacagatgaagatattctcagcagttttattaggttgttttcgtttcaaattgaatgatgagaag |
13024260 |
T |
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| Q |
201 |
aaaaatgtgacttataagacaatgataactcttcatatt |
239 |
Q |
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| T |
13024261 |
aaaaatgtgacttataagacaatgataactcttcatatt |
13024299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 13068757 - 13068599
Alignment:
| Q |
81 |
ttgattgaaatgcaggcaggtcctcggatatgcctaggaaaggagtttgcttatagacagatgaagatattctcagcagttttattaggttgttttcgtt |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13068757 |
ttgattgaaatgcaggcaggtcctcggatatgcctaggaaaagagtttgcttatagacagatgaagatattctcagcagttttattaggttgttttcgtt |
13068658 |
T |
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| Q |
181 |
tcaaattgaatgatgagaagaaaaatgtgacttataagacaatgataactcttcatatt |
239 |
Q |
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| T |
13068657 |
tcaaattgaatgatgagaagaggaatgtgacttataagacaatgataaatcttcatatt |
13068599 |
T |
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