View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_105 (Length: 251)
Name: NF18974_low_105
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_105 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 42881801 - 42881565
Alignment:
| Q |
16 |
atccccaccagtagcagctgaacagaacagcaactctgctatcatgacagcagccactacccaaagcgcctagcagcaaacagacctgcaagacacaaca |
115 |
Q |
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| T |
42881801 |
atccccaccagtagcagctgaacagaacagcaactctgctatcatgacagcagccactacccaaagcgcctagcagcaaacagacctgcaagacacaaca |
42881702 |
T |
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| Q |
116 |
gcagcaacagcaagaacccaggaaaggctcatacgctgacaaaacaccacagcaccactgca-cagctgcaaaaacacccctaaagcacactgttcagcc |
214 |
Q |
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| T |
42881701 |
gcagcaacagcaaaaacccagaaaaggctcacacgctgacaaaacaccacagcaccaatgcagcagctgcaaaaacacccctaaagcacactgttcagcc |
42881602 |
T |
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| Q |
215 |
gcaaatcacaccaaggcaccactttggattccacctc |
251 |
Q |
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| T |
42881601 |
gcaaatcacaccaaggcaccacttcggattccacctc |
42881565 |
T |
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