View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_106 (Length: 250)
Name: NF18974_low_106
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_106 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 13022902 - 13023009
Alignment:
| Q |
6 |
gtccaagaatatttcctcacaaatcacaatgaggatacctaatagtaccaagtcttcaagttttgagaaccccattgaggatggtctaacaagctaaata |
105 |
Q |
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| T |
13022902 |
gtccaaaaaaatttcatcacaaatcacaatgaggatatttaatagtaccaagtcttcaagttttgagaaccccattgaggatggtctaacaagctaaata |
13023001 |
T |
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| Q |
106 |
gaggaatt |
113 |
Q |
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| T |
13023002 |
gaggaatt |
13023009 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 11070895 - 11070948
Alignment:
| Q |
37 |
aggatacctaatag-taccaagtcttcaagttttgagaaccccattgaggatgg |
89 |
Q |
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| T |
11070895 |
aggatacctaataggtaccaagtcttcaaattttgaaaaccccattaaggatgg |
11070948 |
T |
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