View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_108 (Length: 250)
Name: NF18974_low_108
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_108 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 35272824 - 35273060
Alignment:
| Q |
16 |
ataaagataataacaaattttgcaccgatctttctttcaaaaaacaaacttttcaccgatattaaatcgcttatttatacttgttttaaaaaccctaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35272824 |
ataaagataataacaaattttgcaccgatctttctttcaaaaaacaaacttttcaccgatattaaatcgcttatttatacttgtttgaaaaaccctaatc |
35272923 |
T |
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| Q |
116 |
atattttctggcgctctcttcataacaaatcttttcttctcttccaatagctttatcgctt--cccatggatcctcaggaacccaaacgtgttgatcgag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
35272924 |
atattttctggcgctctcttcataacaaatcttttcttctcttccaatagctttatcgcttcccccatggatcctcaggaacccaaacgcgttgatcgag |
35273023 |
T |
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| Q |
214 |
aaatctggcagtgcttggccggaccatcgttcaaaat |
250 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35273024 |
aaatctggcagtgcttggccggaccatcgttcaaaat |
35273060 |
T |
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