View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_110 (Length: 248)
Name: NF18974_low_110
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_110 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 53603623 - 53603867
Alignment:
| Q |
1 |
tatgcctatttttgctcctactttgggcgaggcaaggcttctatcgattggactcttttttcactgtgtacatgtaagcatttatccctttgtaatttta |
100 |
Q |
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| T |
53603623 |
tatgcctatttttgctcctactttgggcgaggcaaggcttctatcgattggactcttttttcactgtgtacatgtaagcatttatccttttgtaatttta |
53603722 |
T |
|
| Q |
101 |
taagtnnnnnnnnnn-tacacatttttgtaaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtat |
199 |
Q |
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| T |
53603723 |
taagtaaaaaaaaaaatacacatttttgtaaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtat |
53603822 |
T |
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| Q |
200 |
gtcttttgctactctattgctaattacaatttacaagttcatctc |
244 |
Q |
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| T |
53603823 |
gtcttttgctactctattgctaattacaatttacaagttcatctc |
53603867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 129 - 221
Target Start/End: Complemental strand, 39170622 - 39170530
Alignment:
| Q |
129 |
aaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgcta |
221 |
Q |
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| T |
39170622 |
aaattataaattagtgttatcaaattgaatgtagatgttcatttacagtatagcatggtcctcttgggtatgtctttagctactctattgcta |
39170530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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