View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_low_114 (Length: 239)
Name: NF18974_low_114
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_114 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43535828 - 43535605
Alignment:
| Q |
1 |
tttgattttttcttcttcttctaaagagtttaactagtaaatagtgaaaagtagaataccacactcaaagatgtcaaacgtctctagagcatttgattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43535828 |
tttgattttttcttcttcttctaaagagtttaactagtaaatagtgaaaagtagaataccacactcaaagatgtcaaacgtctctagagcatttgattat |
43535729 |
T |
|
| Q |
101 |
ctaaatttgtattaacaactactcttaga-ttatcatttaagaaactaaaagatgcaacttttatgtnnnnnnntatgcagttactttcacaaatatttg |
199 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
43535728 |
ctaaatttgtattaacaaatactcttagatttatcatttaagaaattaaaagatgcaacttttacataaaaaaatatgcagttactttcacaaatatttg |
43535629 |
T |
|
| Q |
200 |
acttatatttgcaacataaatttt |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
43535628 |
acttatatttgcaacataaatttt |
43535605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University