View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_118 (Length: 234)
Name: NF18974_low_118
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_118 |
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| [»] scaffold0911 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 10033088 - 10033303
Alignment:
| Q |
5 |
cgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttccctggac |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10033088 |
cgtgaatccttcgcttgccatacgttgatcatactcccgaatgtgagcccataaatccaagtcattttgcacatttttcaaaacctggatttccctggac |
10033187 |
T |
|
| Q |
105 |
tgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttggtctggattgcacatttgttgaat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
10033188 |
tgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtttctgttgatctggattgcacatttgttgaat |
10033287 |
T |
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| Q |
205 |
gttccaatgccataac |
220 |
Q |
| |
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|||||||||||||||| |
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| T |
10033288 |
gttccaatgccataac |
10033303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 8479744 - 8479529
Alignment:
| Q |
5 |
cgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttccctggac |
104 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||| ||||| |
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| T |
8479744 |
cgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtcattttgaacatttttcgaaacctggatttccttggac |
8479645 |
T |
|
| Q |
105 |
tgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttggtctggattgcacatttgttgaat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
8479644 |
tgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttctgtctctgctggtctggattgcacatttgctgaat |
8479545 |
T |
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| Q |
205 |
gttccaatgccataac |
220 |
Q |
| |
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|||||||||||||||| |
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| T |
8479544 |
gttccaatgccataac |
8479529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 41068110 - 41067895
Alignment:
| Q |
5 |
cgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttccctggac |
104 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| |
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| T |
41068110 |
cgtgaatccttcggctgccatacgttgatcttactcccgaatgcgagcccataaatccaagtcattttgaacatttttcgaaacctggatttccttggac |
41068011 |
T |
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| Q |
105 |
tgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttggtctggattgcacatttgttgaat |
204 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||| |||||||||||||||||| | ||||| |
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| T |
41068010 |
tgaattgaaacttcacgcacctgatcagcagtaaactcattagctgctgcacttgaattagcttctgtctctgctggtctggattgcacattagctgaat |
41067911 |
T |
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| Q |
205 |
gttccaatgccataac |
220 |
Q |
| |
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|||||||||||||||| |
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| T |
41067910 |
gttccaatgccataac |
41067895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 19936456 - 19936671
Alignment:
| Q |
5 |
cgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttccctggac |
104 |
Q |
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|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| |
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| T |
19936456 |
cgtgaatccttcggcggccatacattgatcatactcccgaatgcgagcccataaatccaagtcattttgaacatttttcgaaacctggatttccttggat |
19936555 |
T |
|
| Q |
105 |
tgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgttggtctggattgcacatttgttgaat |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||||||| ||| | |
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| T |
19936556 |
tgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttttgcctctgctggtctggattgcacatttgctgact |
19936655 |
T |
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| Q |
205 |
gttccaatgccataac |
220 |
Q |
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|||||||||||||||| |
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| T |
19936656 |
gttccaatgccataac |
19936671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0911 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0911
Description:
Target: scaffold0911; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 2857 - 2934
Alignment:
| Q |
5 |
cgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacattttt |
82 |
Q |
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|||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
2857 |
cgtgaagccttctgttgccatccgttgatcatactcgcgaatgcgagcccataaatccaagtcattttgtacattttt |
2934 |
T |
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