View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_126 (Length: 216)
Name: NF18974_low_126
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_126 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 16572964 - 16572790
Alignment:
| Q |
27 |
aataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgca |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |
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| T |
16572964 |
aataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaatcatacttctgtagctctttcattactcttagca |
16572865 |
T |
|
| Q |
127 |
aggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16572864 |
aggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
16572790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 16874845 - 16874672
Alignment:
| Q |
27 |
aataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgca |
126 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
16874845 |
aataggaca-gtcttcacgcctgccacctgtaggagcggcagtgcaatccaaccgacacttcctaaccatgcttctgtagctctttcattactcttagca |
16874747 |
T |
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| Q |
127 |
aggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
201 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16874746 |
aggatggataatttctcagtcaattcgaacgccaaagcctgcaccatagagagttcaacatttcggaacacaatg |
16874672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 16580980 - 16580811
Alignment:
| Q |
32 |
gacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggat |
131 |
Q |
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||||||||||||||||| ||| ||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
16580980 |
gacatgtcttcacgcctaccatctgaaggagtggcagtgcaatccacccgacacttcctaaccatgcttctgtagctctttcactactcttagcaaggat |
16580881 |
T |
|
| Q |
132 |
ggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
201 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16580880 |
ggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
16580811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 16614400 - 16614569
Alignment:
| Q |
32 |
gacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggat |
131 |
Q |
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|
||||||||||||||||| ||| ||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
16614400 |
gacatgtcttcacgcctaccatctgaaggagtggcagtgcaatccacccgacacttcctaaccatgcttctgtagctctttcactactcttagcaaggat |
16614499 |
T |
|
| Q |
132 |
ggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
201 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16614500 |
ggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
16614569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 7392216 - 7392110
Alignment:
| Q |
88 |
cctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacat |
187 |
Q |
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||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||| |
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| T |
7392216 |
cctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacat |
7392117 |
T |
|
| Q |
188 |
ttcggaa |
194 |
Q |
| |
|
||||||| |
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| T |
7392116 |
ttcggaa |
7392110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 21629732 - 21629558
Alignment:
| Q |
27 |
aataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactga-cacttcctaaccatccttctgtagctctttcattactctttgc |
125 |
Q |
| |
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||||||||||||||| | || |||||||||||| ||||| | || |||||||| || || ||| ||| | ||| |||||||||||||||||||||||| |
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| T |
21629732 |
aataggacatgtcttgatgcatgccacctgaagcagcggtattgtaatccaaccgatcatcgcctgaccttgcttatgtagctctttcattactctttgc |
21629633 |
T |
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| Q |
126 |
aaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
201 |
Q |
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|||||| |||| ||| | |||||||||||||||||| ||||||||| | ||| |||||||||||||||| |||||| |
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| T |
21629632 |
aaggatagata-tttattagtcaactcgaacgccaaggcctgcacccttgagtgttcaacatttcggaatacaatg |
21629558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 233279 - 233381
Alignment:
| Q |
88 |
cctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacat |
187 |
Q |
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|
||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| ||||||||| |
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| T |
233279 |
cctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacat |
233378 |
T |
|
| Q |
188 |
ttc |
190 |
Q |
| |
|
||| |
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|
| T |
233379 |
ttc |
233381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 48298405 - 48298497
Alignment:
| Q |
98 |
cttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttc |
190 |
Q |
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|||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| |||||||||||| |
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| T |
48298405 |
cttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttc |
48298497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 10841 - 10919
Alignment:
| Q |
123 |
tgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatg |
201 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||| ||||||||||||| | ||| ||||||||||| ||||||||||| |
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| T |
10841 |
tgcaaggatagataatttctcagtcaacttgaacgacaaagcctgcacccttgagtgttcaacattttggaacacaatg |
10919 |
T |
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