View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_low_13 (Length: 579)
Name: NF18974_low_13
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_13 |
 | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Complemental strand, 34579217 - 34578662
Alignment:
| Q |
20 |
cgaaaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34579217 |
cgaaaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccg |
34579118 |
T |
|
| Q |
120 |
aacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcact |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34579117 |
aacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcact |
34579018 |
T |
|
| Q |
220 |
tcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34579017 |
tcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaa |
34578918 |
T |
|
| Q |
320 |
cttgctcgtcgtatccgtggtgaacgtgcttagggttatagactagttactattctggtattggaatgatttcagggttttgatttag----nnnnnnnn |
415 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34578917 |
cttgctcgtcgtatccgtggtgaacgagcttagggttatagactagttactattctggtattggaatgatttcagggttttgatttagtttttttttttt |
34578818 |
T |
|
| Q |
416 |
atcagttatctcttatgctgccttaaccatggtgatcatgtttagggttacggattcttatcagtttttcctttctcttcaaattattccacttaaataa |
515 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34578817 |
atcagttatcttttatgcttccgtaaccatggtgatcatgtttagggttacatattcttatcagtttttcctttctctgcaaattattccacttaaataa |
34578718 |
T |
|
| Q |
516 |
ttttactatgtttttcctttctctgcaaattatttacttatttttctcttcatctc |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34578717 |
ttttactatgtttttcctttctctgcaaattatttacttatttttctcttcttctc |
34578662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 34584966 - 34584598
Alignment:
| Q |
20 |
cgaaaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584966 |
cgaaaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccg |
34584867 |
T |
|
| Q |
120 |
aacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcact |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584866 |
aacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcact |
34584767 |
T |
|
| Q |
220 |
tcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34584766 |
tcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggtgaaggatattcaa |
34584667 |
T |
|
| Q |
320 |
cttgctcgtcgtatccgtggtgaacgtgcttagggttatagactagttactattctggtattggaatga |
388 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584666 |
cttgctcgtcgtatccgtggtgaacgagcttagggttatagactagttactattctggtattggaatga |
34584598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 48 - 368
Target Start/End: Complemental strand, 34571721 - 34571401
Alignment:
| Q |
48 |
tcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattcca |
147 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34571721 |
tcaagaagcctcatcgttttcgttgcggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattcca |
34571622 |
T |
|
| Q |
148 |
gcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggtt |
247 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
34571621 |
gcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggtt |
34571522 |
T |
|
| Q |
248 |
ggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtg |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34571521 |
ggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgtg |
34571422 |
T |
|
| Q |
348 |
cttagggttatagactagtta |
368 |
Q |
| |
|
||||||| ||| || |||||| |
|
|
| T |
34571421 |
cttagggctatggattagtta |
34571401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 56 - 373
Target Start/End: Complemental strand, 34562922 - 34562599
Alignment:
| Q |
56 |
cctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttg |
155 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| ||||||||||| || |||||| || |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
34562922 |
cctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattccagcgtcttg |
34562823 |
T |
|
| Q |
156 |
ttcgtgaaattgctcaga---atttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggttt |
252 |
Q |
| |
|
|||||||||||||||| || ||||| | ||||| ||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
34562822 |
ttcgtgaaattgctcatgttgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcggaagcatatttggttggttt |
34562723 |
T |
|
| Q |
253 |
gtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaa---cgtgct |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||||||| | ||||||||||||||| |||| | |
|
|
| T |
34562722 |
gtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgcttgccgtatccgtggtgaacgtcgtggt |
34562623 |
T |
|
| Q |
350 |
tagggttatagactagttactatt |
373 |
Q |
| |
|
||||||||| ||||||||| |||| |
|
|
| T |
34562622 |
tagggttattgactagttagtatt |
34562599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 324
Target Start/End: Original strand, 13576203 - 13576477
Alignment:
| Q |
50 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagc |
149 |
Q |
| |
|
|||||||| ||||||| ||||||||||| || ||||||||||| || || |||||||||||| | ||||| ||| | || | || ||||||||||| |
|
|
| T |
13576203 |
aagaagccacatcgtttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaa |
13576302 |
T |
|
| Q |
150 |
gtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttgg |
249 |
Q |
| |
|
| | ||||| |||||||||||| ||||||| || ||| | | || || ||| ||| ||| || ||||| ||||| | ||||||||| | ||||| |
|
|
| T |
13576303 |
gattggttcgagaaattgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
13576402 |
T |
|
| Q |
250 |
tttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
324 |
Q |
| |
|
||||||||||||||| ||| | ||||| ||||||||||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
13576403 |
tttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgc |
13576477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 518 - 571
Target Start/End: Complemental strand, 34584456 - 34584403
Alignment:
| Q |
518 |
ttactatgtttttcctttctctgcaaattatttacttatttttctcttcatctc |
571 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34584456 |
ttactgtgtatttcctttctctgcacattatttacttatttttctcttcttctc |
34584403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 25865528 - 25865863
Alignment:
| Q |
23 |
aaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaac |
122 |
Q |
| |
|
||||||| ||||| ||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| || | |
|
|
| T |
25865528 |
aaatctgctccaaccaccggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagc |
25865627 |
T |
|
| Q |
123 |
ttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttca |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
25865628 |
ttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagatttcagagtcatgctgttcttgcacttca |
25865727 |
T |
|
| Q |
223 |
ggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaactt |
322 |
Q |
| |
|
|||||| | || |||||| | || || |||||||||||||| ||||||||||||||||||||||||||| | || ||||| ||||||||||| ||| |
|
|
| T |
25865728 |
ggaagctgctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattcagctt |
25865827 |
T |
|
| Q |
323 |
gctcgtcgtatccgtggtgaacgtgcttagggttat |
358 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25865828 |
gctcgtcgtattcgtggtgaacgtgcttagggttat |
25865863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 35 - 354
Target Start/End: Original strand, 41943784 - 41944103
Alignment:
| Q |
35 |
acaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgta |
134 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||| || |||||| |||| || ||||||||||||| |
|
|
| T |
41943784 |
acaaccggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgta |
41943883 |
T |
|
| Q |
135 |
aacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtgga |
234 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||| |||||||||||||||| || |
|
|
| T |
41943884 |
agcttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcaga |
41943983 |
T |
|
| Q |
235 |
agcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatc |
334 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
41943984 |
agcttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgtatt |
41944083 |
T |
|
| Q |
335 |
cgtggtgaacgtgcttaggg |
354 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41944084 |
cgtggtgaacgtgcttaggg |
41944103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 38799371 - 38799591
Alignment:
| Q |
71 |
cctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctc |
170 |
Q |
| |
|
|||||||| |||||| | | ||||| ||||||||||||||| | || || ||| | |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38799371 |
cctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctc |
38799470 |
T |
|
| Q |
171 |
agaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaattt |
270 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||| ||| ||||| ||||| | |||||||| ||||||||| | ||||| || || || | |
|
|
| T |
38799471 |
aagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacct |
38799570 |
T |
|
| Q |
271 |
gtgtgcaattcatgctaagag |
291 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38799571 |
ttgtgcaattcatgctaagag |
38799591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 38822146 - 38821926
Alignment:
| Q |
71 |
cctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctc |
170 |
Q |
| |
|
|||||||| |||||| | | ||||| ||||||||||||||| | || || ||| | |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38822146 |
cctggaactgttgctttgagagagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctc |
38822047 |
T |
|
| Q |
171 |
agaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaattt |
270 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||||| ||| ||||| ||||| | |||||||| ||||||||| | ||||| || || || | |
|
|
| T |
38822046 |
aagatttcaagacagatctgagattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacct |
38821947 |
T |
|
| Q |
271 |
gtgtgcaattcatgctaagag |
291 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38821946 |
ttgtgcaattcatgctaagag |
38821926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 44343856 - 44343956
Alignment:
| Q |
50 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgt--gagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattcca |
147 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
44343856 |
aagaagcctcatcattatcgtcctggaaccgttgctcttcgtgagagatctgtaagtatcagaagagtaccaaacttttgatccgtaagcttcccttcca |
44343955 |
T |
|
| Q |
148 |
g |
148 |
Q |
| |
|
| |
|
|
| T |
44343956 |
g |
44343956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 68 - 324
Target Start/End: Complemental strand, 43479929 - 43479673
Alignment:
| Q |
68 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattg |
167 |
Q |
| |
|
||||||||||| ||||||||||||||||| || |||||||||||| ||||||| ||| | ||| | || ||||||||||| | | ||| | ||||| | |
|
|
| T |
43479929 |
cgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggttagggaaatcg |
43479830 |
T |
|
| Q |
168 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
267 |
Q |
| |
|
||||| ||||||| || ||| | || |||||||| || ||| || ||||| ||||| | ||||||||| | |||||||||||||| ||||| || |
|
|
| T |
43479829 |
ctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgttggtttgtttgaagatactaa |
43479730 |
T |
|
| Q |
268 |
tttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
324 |
Q |
| |
|
| || || ||||||||||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
43479729 |
cctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgc |
43479673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 217 - 358
Target Start/End: Original strand, 44343977 - 44344110
Alignment:
| Q |
217 |
acttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatatt |
316 |
Q |
| |
|
|||||||||||||| || |||||| | || || |||||||||||||||||||||||||| ||||||||||||||| | || ||||| ||||||||| |
|
|
| T |
44343977 |
acttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatatt |
44344076 |
T |
|
| Q |
317 |
caacttgctcgtcgtatccgtggtgaacgtgcttagggttat |
358 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||| |
|
|
| T |
44344077 |
cagct--------gtatccgtggtgaacgtgcttagggttat |
44344110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 89 - 183
Target Start/End: Original strand, 26592062 - 26592156
Alignment:
| Q |
89 |
cgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagac |
183 |
Q |
| |
|
|||||||| || ||||| |||||| | ||||||||| | || || |||||||| |||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
26592062 |
cgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaggatttcaagac |
26592156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 180 - 353
Target Start/End: Complemental strand, 7594274 - 7594101
Alignment:
| Q |
180 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
279 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
7594274 |
agacggatctgagattccagagccatgcagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaat |
7594175 |
T |
|
| Q |
280 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttagg |
353 |
Q |
| |
|
||||||||||||| | || ||||| ||||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
7594174 |
tcatgctaagagggtgacaattatgccaaaggatattcagcttgctcgtcgcattcgtggtgaacgtgcttagg |
7594101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 7594492 - 7594401
Alignment:
| Q |
90 |
gtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaag |
181 |
Q |
| |
|
||||||| |||||||| |||||| |||| || ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7594492 |
gtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaag |
7594401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 18492719 - 18492794
Alignment:
| Q |
107 |
cagaagggtacc-gaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaag |
181 |
Q |
| |
|
|||||| ||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
18492719 |
cagaagagtacctgaattttttatccgtaaacttccattccagtgtcttgttcgtgaaatttctcaagatttcaag |
18492794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 18471108 - 18471173
Alignment:
| Q |
107 |
cagaagggtacc-gaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctca |
171 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||| ||||||||| || |||||||| |||||||| |||| |
|
|
| T |
18471108 |
cagaagagtacctgaacttttgatccataagcttccattcgagtgtcttgtttgtgaaatttctca |
18471173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 50 - 324
Target Start/End: Original strand, 21317429 - 21317703
Alignment:
| Q |
50 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagc |
149 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || || |||||||| || || ||||| |||||| | || || ||| |||| | |||||||||||||| | |
|
|
| T |
21317429 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaac |
21317528 |
T |
|
| Q |
150 |
gtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttgg |
249 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| || ||| | |||||||||||| ||| ||| || ||||| ||||| | ||||||||| | ||||| |
|
|
| T |
21317529 |
gtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttgg |
21317628 |
T |
|
| Q |
250 |
tttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
324 |
Q |
| |
|
||||||||| ||||| ||| | || || |||||||||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
21317629 |
tttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
21317703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 68 - 324
Target Start/End: Complemental strand, 3930216 - 3929960
Alignment:
| Q |
68 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattg |
167 |
Q |
| |
|
||||| |||||||| || ||||||||||| || |||||||||||| | || |||||| | || | |||||||||||||| | | ||||||||||| | |
|
|
| T |
3930216 |
cgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttcgtgaaatcg |
3930117 |
T |
|
| Q |
168 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
267 |
Q |
| |
|
||||| ||||||| || ||| | |||| ||||| ||| ||| || ||||| ||||| | ||||| ||| | |||||||||||||| ||||| || |
|
|
| T |
3930116 |
ctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgtttgaagatacgaa |
3930017 |
T |
|
| Q |
268 |
tttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
324 |
Q |
| |
|
| | ||||| |||||||||||||| | || ||||| ||||||||||||||||| |
|
|
| T |
3930016 |
tctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgc |
3929960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 68 - 327
Target Start/End: Complemental strand, 12547254 - 12546995
Alignment:
| Q |
68 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattg |
167 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| || ||||| |||||| | ||||| ||| | || | || |||||||||||| | |||||||||||||| | |
|
|
| T |
12547254 |
cgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcg |
12547155 |
T |
|
| Q |
168 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
267 |
Q |
| |
|
|||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||| ||||| || |
|
|
| T |
12547154 |
ctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaa |
12547055 |
T |
|
| Q |
268 |
tttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcg |
327 |
Q |
| |
|
| | ||||| ||||||||||||||| | || | ||| ||||||||||||||||||||| |
|
|
| T |
12547054 |
tctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcg |
12546995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 68 - 327
Target Start/End: Original strand, 12531365 - 12531624
Alignment:
| Q |
68 |
cgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattg |
167 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| || ||||| |||||| | ||||| ||| | || | || |||||||||||| | |||||||||||||| | |
|
|
| T |
12531365 |
cgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcg |
12531464 |
T |
|
| Q |
168 |
ctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaa |
267 |
Q |
| |
|
|||| ||||||| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||| ||||| || |
|
|
| T |
12531465 |
ctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaa |
12531564 |
T |
|
| Q |
268 |
tttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcg |
327 |
Q |
| |
|
| | ||||| ||||||||||||||| | || | ||| ||||||||||||||| ||||| |
|
|
| T |
12531565 |
tctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcg |
12531624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 50 - 324
Target Start/End: Original strand, 30867 - 31140
Alignment:
| Q |
50 |
aagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagc |
149 |
Q |
| |
|
|||||||| || |||| ||||| ||||| || || |||||||| || || ||||| |||||| | || || ||| |||| | ||||||| |||||| | |
|
|
| T |
30867 |
aagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaac |
30965 |
T |
|
| Q |
150 |
gtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttgg |
249 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| || || | |||||||||||| ||| ||| || ||||| ||||| | ||||||||| | ||||| |
|
|
| T |
30966 |
gtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttgg |
31065 |
T |
|
| Q |
250 |
tttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
324 |
Q |
| |
|
||||||||| ||||| ||| | || || |||||||||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
31066 |
tttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
31140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 34748634 - 34748743
Alignment:
| Q |
74 |
ggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcaga |
173 |
Q |
| |
|
||||| || ||||| |||||||| |||||||| |||||| | |||||||| | ||||| ||||| || ||||||||||| |||||||| || |||||| |
|
|
| T |
34748634 |
ggaaccgtcgctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcagg |
34748733 |
T |
|
| Q |
174 |
atttcaagac |
183 |
Q |
| |
|
|||||||||| |
|
|
| T |
34748734 |
atttcaagac |
34748743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 180
Target Start/End: Original strand, 24860389 - 24860531
Alignment:
| Q |
38 |
accggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaac |
137 |
Q |
| |
|
||||||||| | ||||| ||||| |||| ||||| ||||| ||||| ||||| || || || ||||| || || | || || ||| | ||||| |||| |
|
|
| T |
24860389 |
accggcggagtgaagaaacctcaccgtttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaac |
24860488 |
T |
|
| Q |
138 |
ttccattccagcgtcttgttcgtgaaattgctcagaatttcaa |
180 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
24860489 |
ttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa |
24860531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 44771153 - 44771112
Alignment:
| Q |
139 |
tccattccagcgtcttgttcgtgaaattgctcagaatttcaa |
180 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaa |
44771112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University