View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_130 (Length: 214)
Name: NF18974_low_130
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_130 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 28460999 - 28460819
Alignment:
| Q |
16 |
gttttcgggaaggcgaaagtaaagtcttttaggttgctcaaatctaagttttgtcatttatcttttgatttgcatgtttgattgataaatcccttctttt |
115 |
Q |
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| T |
28460999 |
gttttgggtaaggtgaaagtaaagtcttttaggttgctcaaatctaaattttgtcatttatcttttgatttgtatgtttgatagataaatcccttctttt |
28460900 |
T |
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| Q |
116 |
gtcttgggatgcctactacttagtgttttctttggtccgtttagccggtttggctttgtgattcttgtgtttgaccttttc |
196 |
Q |
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| T |
28460899 |
gtcttgggatgcctactacttagtgttttctttagtccttttagccggtttggctttgtgattcttgtgtttgaccttttc |
28460819 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 7071468 - 7071538
Alignment:
| Q |
25 |
aaggcgaaagtaaagtcttttaggttgctcaaatctaagttttgtcatttatcttttgatttgcatgtttg |
95 |
Q |
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| T |
7071468 |
aaggtgaaagtaatgaatttttggtggctcaaagataagttttgtgatttatcttttgatttacatgtttg |
7071538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 39811356 - 39811394
Alignment:
| Q |
72 |
tttatcttttgatttgcatgtttgattgataaatccctt |
110 |
Q |
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| T |
39811356 |
tttatcttttgatttgcatgtctgatggataaatccctt |
39811394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 7030778 - 7030742
Alignment:
| Q |
51 |
gctcaaatctaagttttgtcatttatcttttgatttg |
87 |
Q |
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| T |
7030778 |
gctcaaaactaagttttgtaatttatcttttgatttg |
7030742 |
T |
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