View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_132 (Length: 213)
Name: NF18974_low_132
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_132 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 37429263 - 37429085
Alignment:
| Q |
20 |
tctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttccaagttacattttgttcttttacaatctaacaact |
119 |
Q |
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| T |
37429263 |
tctatgttagatttatcgtttaataaattagatggcccaattccgattcaaatcaccaaattttccaagttaaattttgttcttttacaatctaacaact |
37429164 |
T |
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| Q |
120 |
taaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagg |
198 |
Q |
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| T |
37429163 |
taaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataaccaactcacagg |
37429085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 37640304 - 37640225
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgtcatggttgtatctcaatgataactaactcacagg |
198 |
Q |
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| T |
37640304 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagtgacaacaatctcacagg |
37640225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 37400540 - 37400585
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
37400540 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgt |
37400585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 37533532 - 37533487
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
37533532 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgt |
37533487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 37594756 - 37594711
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
37594756 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgt |
37594711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 37697219 - 37697174
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
37697219 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgt |
37697174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 37703100 - 37703055
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
37703100 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgt |
37703055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 37824327 - 37824282
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
37824327 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgt |
37824282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 37712056 - 37712011
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
37712056 |
ttaaatggaacaattccacagtggtgttattctttgccttcattgt |
37712011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 24217468 - 24217513
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
24217468 |
ttaaatggaacaattccgcaatggtgttattccttgccttcgttgt |
24217513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 16842604 - 16842649
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
16842604 |
ttaaatggaacaattccaaattggtgttattctttgccttcgttgt |
16842649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 14553542 - 14553497
Alignment:
| Q |
119 |
ttaaacggaacaattccacactggtgttattccttgccttcgttgt |
164 |
Q |
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| T |
14553542 |
ttaaatggaacaattccacattggtgttattctttgccttcgttgt |
14553497 |
T |
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