View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_15 (Length: 568)
Name: NF18974_low_15
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 12 - 553
Target Start/End: Original strand, 22044919 - 22045460
Alignment:
| Q |
12 |
acagaccgaaccaaatggaaaatagggaaaagtaccatgtagaataatgattataagttagataagtttacatacatagtaaattaattgagaaagaaat |
111 |
Q |
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| T |
22044919 |
acagaccgaaccaaatggaaaatagggaaaagtactatgtagaataatgattataagttagctaagtttacatacatagtaaattaattgagaaagaaat |
22045018 |
T |
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| Q |
112 |
tagcaagcataagattcctgtgatatactttcaatggtcatagatttaataacgagtgtgctagagtgtaagagtatagtaaatagtatcttggattttg |
211 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
22045019 |
tagcaagcataagattcctgtaatatactttcaatggtcatagatttaataatgagtgtgctagagtgtaagagtatagtaaattgtatcttggatttgg |
22045118 |
T |
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| Q |
212 |
agaatatgaatgaaagaacttagattgattgataatgataatggaataaagaaattgtcttggacttgtttaatcatcaatattgatattttgaaaattt |
311 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22045119 |
agaatatgaatgaaagaacttagattgattgatagtcataatggaatcaagaaattgtcttggacttgtttaatcatcaatattgatactttgaaaattt |
22045218 |
T |
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| Q |
312 |
tgtttacatattttgtaagaaattgcaaattaacctatataaagaaaataagatatggtttctttattttttgtagtgaatttatgtatttacattagaa |
411 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
22045219 |
tgtttacatattttctaagaaattgcatattaacctatataaagaaaataagagatggtttattttatttttttagtgaatttatgtatttacattagaa |
22045318 |
T |
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| Q |
412 |
acattaatattattttgctttgatatacaaatgaaaagaattataaataaacacgggataattgaaatctaaaattcacattatataaattgattatcaa |
511 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
22045319 |
acattattattattttgctttgatatacaaatggaaagaattataaataaacacgggataattgaaatataaatgtcacattatataaattgattatcaa |
22045418 |
T |
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| Q |
512 |
cttgaagtccacttaaaatgactactccattcggtgatatct |
553 |
Q |
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| T |
22045419 |
ctttaaacccacttaaaatgactactccattcggtcatatct |
22045460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 258
Target Start/End: Original strand, 31773908 - 31774046
Alignment:
| Q |
121 |
taagattcctgtgatatactttcaatggtcatagatttaataacgagtgtgctagagtgtaagagtatagt---aaatagtatcttggattttgagaata |
217 |
Q |
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|||||||||| || ||||||| |||||||||||| ||||||| || |||| |||||||||||| ||||| ||| | || |||||||| ||||||| |
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| T |
31773908 |
taagattcctccgacatactttgaatggtcatagagttaataatgaatgtgttagagtgtaaga--atagtgaaaaaaaatagattggatttggagaata |
31774005 |
T |
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| Q |
218 |
tgaatgaaagaacttagattgattgataatgataatggaat |
258 |
Q |
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| T |
31774006 |
tgaatcaaataacttagattgattgatagtgataatggaat |
31774046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 401
Target Start/End: Original strand, 31774090 - 31774215
Alignment:
| Q |
274 |
gacttgtttaatcatcaatattgatattttgaaaattttgtttacatattttgtaagaaattgcaaattaacctatataaagaaaataagatatggtttc |
373 |
Q |
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||||||| |||||||||| | |||| ||||||||||||| || | ||| | ||||||||| |||| |||||||| |||| ||||||| ||||||| |
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| T |
31774090 |
gacttgtctaatcatcaacagtgatgcattgaaaattttgtgtaaaaattgtataagaaattataaataaacctata--aagacaataagagatggtttg |
31774187 |
T |
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| Q |
374 |
tttattttttgtagtgaatttatgtatt |
401 |
Q |
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||||||| |||||||||||| |||||| |
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| T |
31774188 |
tttatttgatgtagtgaatttttgtatt |
31774215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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