View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18974_low_16 (Length: 566)
Name: NF18974_low_16
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Original strand, 3121269 - 3121811
Alignment:
| Q |
16 |
atactaaaccctaatacgattacagtacttttacaactacaataattttcctcacaaaccatggtctacgataatgt---------gacacagaaagcaa |
106 |
Q |
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| T |
3121269 |
atactaaactcttatacgattattatacttttgcaactacaattattttcctcacaaaccatggtctacgataatgtattaataatgacacagaaagcaa |
3121368 |
T |
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| Q |
107 |
ctacacatatataacataaaagttaggttcacttggatgcttcccaacaaaaggaatcaggaaatccaaaaattcaattcaacttgtgcacctttttctt |
206 |
Q |
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| T |
3121369 |
ctacacatatataacataaaagttaggttcacttggatgcttcccaacaaaaggaatcaggaaatccaaaaattcaattcaacttgtgcacctttttctt |
3121468 |
T |
|
| Q |
207 |
ttcctctttcccatagtcacttgcaggaaaaagtttaccaccctttttcctccattgcatattcgagaatctcaaaacgtccatttccaaaatacatgaa |
306 |
Q |
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| T |
3121469 |
ttcctctttcccatagtcacttgcaggaaaaagtttaccaccctttttcctccattgcatattcgagaatctcaaaacgtccatttccaaaatacatgaa |
3121568 |
T |
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| Q |
307 |
gaccatgacaaaaccatgtgaggaatcaacatgaagaatactttgttattcccacttttttattacatataaaaatataagccggaactatacataatag |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3121569 |
gaccatgacaaaaccatgtgaggaatcaacatgaagaatactttgttattcccacttttttattacatataaaaatataagccggaactatacataatag |
3121668 |
T |
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| Q |
407 |
gaaatttcacttaagatttgtaaattaatagattccttcaattcttctcacatccatccgaacacaacaccgaatatgaaagaaaatctctacgaccaat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3121669 |
gaaatttcacttaagatttgtaaattaatagattccttcaattcttctcacatccatccgaacacaacaccgaataagaaagaaaatctctacgaccaat |
3121768 |
T |
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| Q |
507 |
caaattatctttaattaaaatctttttatttaatgattttcat |
549 |
Q |
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| T |
3121769 |
caaattatctttaattaaaatctttttatttagtgattttcat |
3121811 |
T |
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