View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18974_low_17 (Length: 548)
Name: NF18974_low_17
Description: NF18974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18974_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Original strand, 48593225 - 48593738
Alignment:
| Q |
19 |
ggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaaccca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593225 |
ggaagattgtgtggttgatggtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaaccca |
48593324 |
T |
|
| Q |
119 |
ttagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtc |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593325 |
ttagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtc |
48593424 |
T |
|
| Q |
219 |
ctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
48593425 |
ctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagatcttaga |
48593524 |
T |
|
| Q |
319 |
tcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttaca |
418 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48593525 |
tcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttaca |
48593624 |
T |
|
| Q |
419 |
tttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctctcctat |
518 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
48593625 |
tttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctcttctat |
48593720 |
T |
|
| Q |
519 |
ttctctttacttcatctc |
536 |
Q |
| |
|
||||||||||||| |||| |
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|
| T |
48593721 |
ttctctttacttcttctc |
48593738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Original strand, 48597836 - 48598349
Alignment:
| Q |
19 |
ggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaaccca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48597836 |
ggaagattgtgtggttgatggtaacatgattctgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaaccca |
48597935 |
T |
|
| Q |
119 |
ttagagtttagaccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtc |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48597936 |
ttagagtttaggccagaaaggtttttagaaaacaaagatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtc |
48598035 |
T |
|
| Q |
219 |
ctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
48598036 |
ctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagatcttaga |
48598135 |
T |
|
| Q |
319 |
tcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttaca |
418 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48598136 |
tcaaggcaaaaaaattgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttaca |
48598235 |
T |
|
| Q |
419 |
tttcttcaactttaataaaagggaatttgtgataaattaagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctctcctat |
518 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48598236 |
tttcttcaactttagtaaaagggaatttgtgata----aagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctcttctat |
48598331 |
T |
|
| Q |
519 |
ttctctttacttcatctc |
536 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
48598332 |
ttctctttacttcttctc |
48598349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 23231033 - 23230593
Alignment:
| Q |
19 |
ggaagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaaccca |
118 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||| || |
|
|
| T |
23231033 |
ggaagattgtgttgttgatggtaaaatggttccaaaaggatcaatggtttgtgtgaacatttgggctatgggaagagaccaaaagatatgggaaaatgca |
23230934 |
T |
|
| Q |
119 |
ttagagtttagaccagaaaggtttttagaaaacaaag---------atattgacatgaaagggcaccagtttgagttgttgccatttggttctggaagga |
209 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| |||| || ||||||||||| || | ||||||| | ||||||||||||||||||| |
|
|
| T |
23230933 |
ttagattttaagccagaaaggtttttagaaaacaaagaaggaaacaatatagatatgaaagggcatcactatgagttgctaccatttggttctggaagga |
23230834 |
T |
|
| Q |
210 |
gaggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaa |
309 |
Q |
| |
|
|||| || ||||||||||| |||||| | || ||||| ||||| ||| | || |||||||| ||||||||||||||||| |||||||| || ||| |||| |
|
|
| T |
23230833 |
gaggctgccctggtatgccgttggccatgcgccaattgcccaccgtagtcggggctttggtgcaatgctttgagtggaaaatgcttgactccgaaggtaa |
23230734 |
T |
|
| Q |
310 |
gattttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaac |
409 |
Q |
| |
|
|| ||||||| |||| | |||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||| |
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|
| T |
23230733 |
aatattagatcgaggcaaaacaatcgatatggatgaaagacctggattgaccgctcctagagccaatgatcttatttgtattccgatttcaagaatgaac |
23230634 |
T |
|
| Q |
410 |
ccccttacatttcttcaactttaataaaagggaatttgtga |
450 |
Q |
| |
|
|| ||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
23230633 |
ccaaatacttttcttcagcttttgtaaaagggaatttgtga |
23230593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 21 - 408
Target Start/End: Complemental strand, 23223286 - 23222890
Alignment:
| Q |
21 |
aagattgtgtggttgatggtaacatgattccgaaaggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccatt |
120 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| | ||||||| |||||| ||| |||||||| | |
|
|
| T |
23223286 |
aagattgtgtggtcgatgggaaaatgatcaaaaaaggctcaatagtttgtgtgaacatttgggctattggaagggactcaaagacttggaaaaacccact |
23223187 |
T |
|
| Q |
121 |
agagtttagaccagaaaggtttttagaa-------aacaaag--atattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggaga |
211 |
Q |
| |
|
||||||||| || ||||||||||||||| || | || | || || || |||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
23223186 |
agagtttaggcctgaaaggtttttagaatctggaaaagagagtgagatagatatcaaagggcatgactttgagttgttgccatttggttctggaaggaga |
23223087 |
T |
|
| Q |
212 |
ggttgtcctggtatgcctttggccctacgtcaattacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaaga |
311 |
Q |
| |
|
||||| || || |||||||||||| | || |||| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||| |||| |
|
|
| T |
23223086 |
ggttgcccggggatgcctttggccatgcgcgaattgccgactgtgattggagctttagtacaatgctttgagtggaagatgcttgactctgaaggtaaat |
23222987 |
T |
|
| Q |
312 |
ttttagatcaaggcnnnnnnnttgatatggatgaacggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaa |
408 |
Q |
| |
|
| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
23222986 |
tattagatcaaggcaaaacaatcgatatggatgaacggcctggattgactgctcctagagccaatgatcttttttgcattccagttgcaagattgaa |
23222890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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